General information for g14026.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Autophagy-related protein 101.
Parent gene
- The parent gene g14026 is located on chr_1: 34108416..34109078 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14026 | g14026.t1 | TSS | g14026.t1 | 34108084 | 34108084 |
| chr_1 | g14026 | g14026.t1 | isoform | g14026.t1 | 34108416 | 34109078 |
| chr_1 | g14026 | g14026.t1 | exon | g14026.t1.exon1 | 34108416 | 34109078 |
| chr_1 | g14026 | g14026.t1 | cds | g14026.t1.CDS1 | 34108416 | 34109078 |
| chr_1 | g14026 | g14026.t1 | TTS | g14026.t1 | 34109514 | 34109514 |
Sequences
>g14026.t1 Gene=g14026 Length=663
ATGAATGCAAGATCACAAATATTTGAGTTTACTTTGGAAGATAGGCAAATAAATGAGACC
TTAGCAAGTCTCTTTCATACAGTGTTGTTTCATAGAAGTCTTGGCAAATTCATTTACTCA
GGTGATTCATCTTATAGTGTCGGAACGATCGGCACTCAAGATATCGATTGTGATTTCATT
GATTTCACATATGTTTGTTGTTCTTCACCTTCACTCGATCGCGCAATTAAGAAAGAAATT
AGTAACTTTAGTGAACAATTACGTAGTCATGAATCAGGCTGCGCTGGTCAAATAAGTTTG
GAATTCTTTCAAAAGAAAAAGAATCGCTGGCCTTTTCAAGCCGAAAACATTCCTTGGGAA
GTGTGGACGGTGCGATTAGATTTGCTTGAATTGAATAATGAAGACGAACGGCAAATGTAT
CGTGAACGTGTCGGTGATATGTTGGCTGAAAAAATTTTATACATAACTGAAGTGATGAAT
CGTCAAGATGACTATGTTCCAAAGATGCCGGCACAAACTGAGTTAGATTTGATATTTGAT
ACAAGTCATGCTGATGTGCAACCATATTTGTTTAAGTTTAAATTTAGTACATCTGCAGGT
GCCGCTTCGACATCTGTTAAAAGCACAATGCAGAAGATTATTAAGGAAACACTTAGCTTG
TGA
>g14026.t1 Gene=g14026 Length=220
MNARSQIFEFTLEDRQINETLASLFHTVLFHRSLGKFIYSGDSSYSVGTIGTQDIDCDFI
DFTYVCCSSPSLDRAIKKEISNFSEQLRSHESGCAGQISLEFFQKKKNRWPFQAENIPWE
VWTVRLDLLELNNEDERQMYRERVGDMLAEKILYITEVMNRQDDYVPKMPAQTELDLIFD
TSHADVQPYLFKFKFSTSAGAASTSVKSTMQKIIKETLSL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g14026.t1 | PANTHER | PTHR13292:SF0 | AUTOPHAGY-RELATED PROTEIN 101 | 1 | 219 | 0 |
| 3 | g14026.t1 | PANTHER | PTHR13292 | UNCHARACTERIZED | 1 | 219 | 0 |
| 1 | g14026.t1 | Pfam | PF07855 | Autophagy-related protein 101 | 10 | 172 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006914 | autophagy | BP |
KEGG
Orthology
- This transcript has been annotated with K19730 (autophagy-related protein 101)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
