General information for g1403.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Acyl-CoA Delta(11) desaturase.
Parent gene
- The parent gene g1403 is located on chr_3: 10658608..10664632 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1403 | g1403.t1 | isoform | g1403.t1 | 10658608 | 10664632 |
| chr_3 | g1403 | g1403.t1 | exon | g1403.t1.exon1 | 10658608 | 10658822 |
| chr_3 | g1403 | g1403.t1 | cds | g1403.t1.CDS1 | 10658608 | 10658822 |
| chr_3 | g1403 | g1403.t1 | exon | g1403.t1.exon2 | 10658872 | 10658979 |
| chr_3 | g1403 | g1403.t1 | cds | g1403.t1.CDS2 | 10658872 | 10658979 |
| chr_3 | g1403 | g1403.t1 | exon | g1403.t1.exon3 | 10664447 | 10664554 |
| chr_3 | g1403 | g1403.t1 | cds | g1403.t1.CDS3 | 10664447 | 10664554 |
| chr_3 | g1403 | g1403.t1 | exon | g1403.t1.exon4 | 10664614 | 10664632 |
| chr_3 | g1403 | g1403.t1 | cds | g1403.t1.CDS4 | 10664614 | 10664632 |
| chr_3 | g1403 | g1403.t1 | TSS | g1403.t1 | NA | NA |
| chr_3 | g1403 | g1403.t1 | TTS | g1403.t1 | NA | NA |
Sequences
>g1403.t1 Gene=g1403 Length=450
ATGCTGGCATTTGGCGAAGGCTGCACAATTATCATCATGTCTTTCCTTATAGATTATAAA
ACTTCAGAACATGGAAAATATTGGTGCAATTACACGACTGGATTTTTGGAATTTTGTGCT
AAAATTGGCTGGCACAATTATCATCATGTCTTTCCTTATGATTATAAAACTTCAGAACAT
GGAAAATATTGGTGCAATTACACGACTGGATTTTTGGAATTTTGTGCTAAAATTGGTTGG
GCAACAGATTTAAAAACAGTCAGTGCTGAAGTAATTTGTAAACGTGTTTTAAGAACAGGC
GATGGAAGTCATCTTTTTGCCAAAAATCAATCAAATCAAATGACAAGTGAAGAAAATAAA
TATGAAGAATTTGTATGGGGTTGGCAAGATAAATTGCTGACTGAAGACGAAAAAAAATAC
GTCACTGTTGTTAACAAAACTTTAGCATAA
>g1403.t1 Gene=g1403 Length=149
MLAFGEGCTIIIMSFLIDYKTSEHGKYWCNYTTGFLEFCAKIGWHNYHHVFPYDYKTSEH
GKYWCNYTTGFLEFCAKIGWATDLKTVSAEVICKRVLRTGDGSHLFAKNQSNQMTSEENK
YEEFVWGWQDKLLTEDEKKYVTVVNKTLA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g1403.t1 | PANTHER | PTHR11351 | ACYL-COA DESATURASE | 2 | 44 | 0 |
| 4 | g1403.t1 | PANTHER | PTHR11351:SF91 | DESATURASE 1, ISOFORM A-RELATED | 2 | 44 | 0 |
| 1 | g1403.t1 | PANTHER | PTHR11351 | ACYL-COA DESATURASE | 43 | 109 | 0 |
| 3 | g1403.t1 | PANTHER | PTHR11351:SF91 | DESATURASE 1, ISOFORM A-RELATED | 43 | 109 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed