General information for g14042.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14042 is located on chr_1: 34283183..34285352 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14042 | g14042.t1 | TSS | g14042.t1 | 34282435 | 34282435 |
| chr_1 | g14042 | g14042.t1 | isoform | g14042.t1 | 34282482 | 34284352 |
| chr_1 | g14042 | g14042.t1 | exon | g14042.t1.exon1 | 34282482 | 34282536 |
| chr_1 | g14042 | g14042.t1 | cds | g14042.t1.CDS1 | 34282482 | 34282536 |
| chr_1 | g14042 | g14042.t1 | exon | g14042.t1.exon2 | 34282665 | 34282842 |
| chr_1 | g14042 | g14042.t1 | cds | g14042.t1.CDS2 | 34282665 | 34282842 |
| chr_1 | g14042 | g14042.t1 | exon | g14042.t1.exon3 | 34282903 | 34283105 |
| chr_1 | g14042 | g14042.t1 | cds | g14042.t1.CDS3 | 34282903 | 34283105 |
| chr_1 | g14042 | g14042.t1 | exon | g14042.t1.exon4 | 34283172 | 34284048 |
| chr_1 | g14042 | g14042.t1 | cds | g14042.t1.CDS4 | 34283172 | 34284048 |
| chr_1 | g14042 | g14042.t1 | exon | g14042.t1.exon5 | 34284127 | 34284352 |
| chr_1 | g14042 | g14042.t1 | cds | g14042.t1.CDS5 | 34284127 | 34284352 |
| chr_1 | g14042 | g14042.t1 | TTS | g14042.t1 | 34284547 | 34284547 |
Sequences
>g14042.t1 Gene=g14042 Length=1539
ATGAAGAAAATTTTAGGACTTTTAGTTCTTATAATTTGTATTTTTCATGTATCTGGTTAT
CGTTACTACAGATGCAAAAATAAACTTGATTGCTTAGATACTCAATACTTCTCATGGAGT
TCTTGCAGATGTAAATGTCTCTTTGATTGTCCAAATTATTCCAACGTTATACAAAATAAT
TCAACCTGTGAATGTGAATGTAAAGAGCAACTCAACTGTACAGCACCACAAATCCTTGAT
CCTGATACATGTCAATGCAAATGCAAAAAGACACTAAAATGTGCAAAACCAATGAGCTTT
AATTCAACAATCTGTGATTGTCAATGTCCTAATATTGCATGTGATGGAAATCAAGTCGTT
ATGAAACCAAATTGCACATGTCAATGCCCAACAGCTCCACGAAAATGCAATGATAATCAA
GTTTGGGATCCAATTGCATGCAGTTGTGTTTGCAAAGATCAGCCTCAATGTGCTTTTAAT
CAAGTTTTTAATAATTCTACTTGCTCGTGTCAATGTTCAACACAACCATCATGTGCTTCG
TATCAAACGTTAAACACTAACACATGTGAATGTGACTGTACTACTGATAATAGCACATCA
TGCAATGCTCAACTCCCTTTATATGGTTGGAATAGTAGAAAATGCAATTGTGATTTCTGT
CCTGATAATCTAACTAGAAAAACACTTTGTGAATCTAATGCTAATTACAAATGGAATGCC
ACAAACTGTTCATGTCAATTTTGTCACACTCGAAATGTTGATCAAGCTGCTTGCACTGCT
AAAGGTTCAACATTCGGATGGTCTGAATCACAGTGTAGCTGCATTTTCTGTCTTAATAAA
GATGTTCGTGCAAGTCAATGTGATTTATTGGGATCATTATATGGCTGGAATGATACAACC
TGCAATTGTGATTTCTGCCCTAACTTAAATGATCGAGTAAACTCATGCAATGCTCTTGGT
GACAAATATGGCTTTAATTCGACTCAATGTCAATGTAATTTCTGTTATAAACGATCTGAT
AGAATCACTGCATGTAATGCACAAGGATCAACTTATGGATGGAATGACACAAACTGTAGT
TGTGATTTTTGTTACAATCAAGCTGACAGAATCAACTCTTGTAACTTACTTGGTTCCACT
TATGGCTTTGATCCAATTCAATGCAGTTGTACTTTCTGTTATGGAAAAGCTGATCGTATT
GCTGCATGCAATGCATCAGGCTCAGCTTATGCATGGAACGACACTAGTTGTCAATGTTAT
CTTATTCCTACAACCACTACCACTAGTACTACAACAACGACAACAACAACCACCACAACG
ACGTCAACTACAGCAGCTGTCACGAGCTCATCAAATTCTTCCACAACAACTGCAGATCCA
TTCGCAAGTATACAGAAACTTGGAGCTCTTTTATCGACAAGTCAAAATGATACTGGTTCT
TTCGTTTCACATGTTGCATCTTCATTAACTGATGCATTCTCTCAAGCATTAGGCGAAAAT
ACTTGGAATGCTTACAAACAAGCATTGCTTGGAAATTGA
>g14042.t1 Gene=g14042 Length=512
MKKILGLLVLIICIFHVSGYRYYRCKNKLDCLDTQYFSWSSCRCKCLFDCPNYSNVIQNN
STCECECKEQLNCTAPQILDPDTCQCKCKKTLKCAKPMSFNSTICDCQCPNIACDGNQVV
MKPNCTCQCPTAPRKCNDNQVWDPIACSCVCKDQPQCAFNQVFNNSTCSCQCSTQPSCAS
YQTLNTNTCECDCTTDNSTSCNAQLPLYGWNSRKCNCDFCPDNLTRKTLCESNANYKWNA
TNCSCQFCHTRNVDQAACTAKGSTFGWSESQCSCIFCLNKDVRASQCDLLGSLYGWNDTT
CNCDFCPNLNDRVNSCNALGDKYGFNSTQCQCNFCYKRSDRITACNAQGSTYGWNDTNCS
CDFCYNQADRINSCNLLGSTYGFDPIQCSCTFCYGKADRIAACNASGSAYAWNDTSCQCY
LIPTTTTTSTTTTTTTTTTTTSTTAAVTSSSNSSTTTADPFASIQKLGALLSTSQNDTGS
FVSHVASSLTDAFSQALGENTWNAYKQALLGN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g14042.t1 | Pfam | PF03128 | CXCXC repeat | 76 | 88 | 6.4E-4 |
| 1 | g14042.t1 | Pfam | PF03128 | CXCXC repeat | 139 | 151 | 0.049 |
| 3 | g14042.t1 | Pfam | PF03128 | CXCXC repeat | 160 | 172 | 0.045 |
| 6 | g14042.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 7 | g14042.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 8 | g14042.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 15 | - |
| 9 | g14042.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 19 | - |
| 5 | g14042.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 512 | - |
| 4 | g14042.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05449 (vascular endothelial growth factor C/D)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed