General information for g14042.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14042 is located on chr_1: 34283183..34285352 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14042 | g14042.t3 | TSS | g14042.t3 | 34282435 | 34282435 |
| chr_1 | g14042 | g14042.t3 | isoform | g14042.t3 | 34282482 | 34284352 |
| chr_1 | g14042 | g14042.t3 | exon | g14042.t3.exon1 | 34282482 | 34282540 |
| chr_1 | g14042 | g14042.t3 | cds | g14042.t3.CDS1 | 34282528 | 34282540 |
| chr_1 | g14042 | g14042.t3 | exon | g14042.t3.exon2 | 34282665 | 34282842 |
| chr_1 | g14042 | g14042.t3 | cds | g14042.t3.CDS2 | 34282665 | 34282842 |
| chr_1 | g14042 | g14042.t3 | exon | g14042.t3.exon3 | 34282903 | 34283105 |
| chr_1 | g14042 | g14042.t3 | cds | g14042.t3.CDS3 | 34282903 | 34283105 |
| chr_1 | g14042 | g14042.t3 | exon | g14042.t3.exon4 | 34283172 | 34284048 |
| chr_1 | g14042 | g14042.t3 | cds | g14042.t3.CDS4 | 34283172 | 34284048 |
| chr_1 | g14042 | g14042.t3 | exon | g14042.t3.exon5 | 34284127 | 34284352 |
| chr_1 | g14042 | g14042.t3 | cds | g14042.t3.CDS5 | 34284127 | 34284352 |
| chr_1 | g14042 | g14042.t3 | TTS | g14042.t3 | 34284547 | 34284547 |
Sequences
>g14042.t3 Gene=g14042 Length=1543
ATGAAGAAAATTTTAGGACTTTTAGTTCTTATAATTTGTATTTTTCATGTATCTGGTTAG
TTATCGTTACTACAGATGCAAAAATAAACTTGATTGCTTAGATACTCAATACTTCTCATG
GAGTTCTTGCAGATGTAAATGTCTCTTTGATTGTCCAAATTATTCCAACGTTATACAAAA
TAATTCAACCTGTGAATGTGAATGTAAAGAGCAACTCAACTGTACAGCACCACAAATCCT
TGATCCTGATACATGTCAATGCAAATGCAAAAAGACACTAAAATGTGCAAAACCAATGAG
CTTTAATTCAACAATCTGTGATTGTCAATGTCCTAATATTGCATGTGATGGAAATCAAGT
CGTTATGAAACCAAATTGCACATGTCAATGCCCAACAGCTCCACGAAAATGCAATGATAA
TCAAGTTTGGGATCCAATTGCATGCAGTTGTGTTTGCAAAGATCAGCCTCAATGTGCTTT
TAATCAAGTTTTTAATAATTCTACTTGCTCGTGTCAATGTTCAACACAACCATCATGTGC
TTCGTATCAAACGTTAAACACTAACACATGTGAATGTGACTGTACTACTGATAATAGCAC
ATCATGCAATGCTCAACTCCCTTTATATGGTTGGAATAGTAGAAAATGCAATTGTGATTT
CTGTCCTGATAATCTAACTAGAAAAACACTTTGTGAATCTAATGCTAATTACAAATGGAA
TGCCACAAACTGTTCATGTCAATTTTGTCACACTCGAAATGTTGATCAAGCTGCTTGCAC
TGCTAAAGGTTCAACATTCGGATGGTCTGAATCACAGTGTAGCTGCATTTTCTGTCTTAA
TAAAGATGTTCGTGCAAGTCAATGTGATTTATTGGGATCATTATATGGCTGGAATGATAC
AACCTGCAATTGTGATTTCTGCCCTAACTTAAATGATCGAGTAAACTCATGCAATGCTCT
TGGTGACAAATATGGCTTTAATTCGACTCAATGTCAATGTAATTTCTGTTATAAACGATC
TGATAGAATCACTGCATGTAATGCACAAGGATCAACTTATGGATGGAATGACACAAACTG
TAGTTGTGATTTTTGTTACAATCAAGCTGACAGAATCAACTCTTGTAACTTACTTGGTTC
CACTTATGGCTTTGATCCAATTCAATGCAGTTGTACTTTCTGTTATGGAAAAGCTGATCG
TATTGCTGCATGCAATGCATCAGGCTCAGCTTATGCATGGAACGACACTAGTTGTCAATG
TTATCTTATTCCTACAACCACTACCACTAGTACTACAACAACGACAACAACAACCACCAC
AACGACGTCAACTACAGCAGCTGTCACGAGCTCATCAAATTCTTCCACAACAACTGCAGA
TCCATTCGCAAGTATACAGAAACTTGGAGCTCTTTTATCGACAAGTCAAAATGATACTGG
TTCTTTCGTTTCACATGTTGCATCTTCATTAACTGATGCATTCTCTCAAGCATTAGGCGA
AAATACTTGGAATGCTTACAAACAAGCATTGCTTGGAAATTGA
>g14042.t3 Gene=g14042 Length=498
MYLVSYRYYRCKNKLDCLDTQYFSWSSCRCKCLFDCPNYSNVIQNNSTCECECKEQLNCT
APQILDPDTCQCKCKKTLKCAKPMSFNSTICDCQCPNIACDGNQVVMKPNCTCQCPTAPR
KCNDNQVWDPIACSCVCKDQPQCAFNQVFNNSTCSCQCSTQPSCASYQTLNTNTCECDCT
TDNSTSCNAQLPLYGWNSRKCNCDFCPDNLTRKTLCESNANYKWNATNCSCQFCHTRNVD
QAACTAKGSTFGWSESQCSCIFCLNKDVRASQCDLLGSLYGWNDTTCNCDFCPNLNDRVN
SCNALGDKYGFNSTQCQCNFCYKRSDRITACNAQGSTYGWNDTNCSCDFCYNQADRINSC
NLLGSTYGFDPIQCSCTFCYGKADRIAACNASGSAYAWNDTSCQCYLIPTTTTTSTTTTT
TTTTTTTSTTAAVTSSSNSSTTTADPFASIQKLGALLSTSQNDTGSFVSHVASSLTDAFS
QALGENTWNAYKQALLGN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g14042.t3 | Pfam | PF03128 | CXCXC repeat | 62 | 74 | 0.00062 |
| 1 | g14042.t3 | Pfam | PF03128 | CXCXC repeat | 125 | 137 | 0.04800 |
| 3 | g14042.t3 | Pfam | PF03128 | CXCXC repeat | 146 | 158 | 0.04400 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05449 (vascular endothelial growth factor C/D)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed