General information for g14042.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14042 is located on chr_1: 34283183..34285352 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14042 | g14042.t4 | TSS | g14042.t4 | 34282435 | 34282435 |
| chr_1 | g14042 | g14042.t4 | isoform | g14042.t4 | 34282482 | 34284352 |
| chr_1 | g14042 | g14042.t4 | exon | g14042.t4.exon1 | 34282482 | 34282542 |
| chr_1 | g14042 | g14042.t4 | exon | g14042.t4.exon2 | 34282665 | 34282842 |
| chr_1 | g14042 | g14042.t4 | exon | g14042.t4.exon3 | 34282903 | 34283105 |
| chr_1 | g14042 | g14042.t4 | cds | g14042.t4.CDS1 | 34282961 | 34283105 |
| chr_1 | g14042 | g14042.t4 | exon | g14042.t4.exon4 | 34283172 | 34284048 |
| chr_1 | g14042 | g14042.t4 | cds | g14042.t4.CDS2 | 34283172 | 34284048 |
| chr_1 | g14042 | g14042.t4 | exon | g14042.t4.exon5 | 34284127 | 34284352 |
| chr_1 | g14042 | g14042.t4 | cds | g14042.t4.CDS3 | 34284127 | 34284352 |
| chr_1 | g14042 | g14042.t4 | TTS | g14042.t4 | 34284547 | 34284547 |
Sequences
>g14042.t4 Gene=g14042 Length=1545
ATGAAGAAAATTTTAGGACTTTTAGTTCTTATAATTTGTATTTTTCATGTATCTGGTTAG
TGTTATCGTTACTACAGATGCAAAAATAAACTTGATTGCTTAGATACTCAATACTTCTCA
TGGAGTTCTTGCAGATGTAAATGTCTCTTTGATTGTCCAAATTATTCCAACGTTATACAA
AATAATTCAACCTGTGAATGTGAATGTAAAGAGCAACTCAACTGTACAGCACCACAAATC
CTTGATCCTGATACATGTCAATGCAAATGCAAAAAGACACTAAAATGTGCAAAACCAATG
AGCTTTAATTCAACAATCTGTGATTGTCAATGTCCTAATATTGCATGTGATGGAAATCAA
GTCGTTATGAAACCAAATTGCACATGTCAATGCCCAACAGCTCCACGAAAATGCAATGAT
AATCAAGTTTGGGATCCAATTGCATGCAGTTGTGTTTGCAAAGATCAGCCTCAATGTGCT
TTTAATCAAGTTTTTAATAATTCTACTTGCTCGTGTCAATGTTCAACACAACCATCATGT
GCTTCGTATCAAACGTTAAACACTAACACATGTGAATGTGACTGTACTACTGATAATAGC
ACATCATGCAATGCTCAACTCCCTTTATATGGTTGGAATAGTAGAAAATGCAATTGTGAT
TTCTGTCCTGATAATCTAACTAGAAAAACACTTTGTGAATCTAATGCTAATTACAAATGG
AATGCCACAAACTGTTCATGTCAATTTTGTCACACTCGAAATGTTGATCAAGCTGCTTGC
ACTGCTAAAGGTTCAACATTCGGATGGTCTGAATCACAGTGTAGCTGCATTTTCTGTCTT
AATAAAGATGTTCGTGCAAGTCAATGTGATTTATTGGGATCATTATATGGCTGGAATGAT
ACAACCTGCAATTGTGATTTCTGCCCTAACTTAAATGATCGAGTAAACTCATGCAATGCT
CTTGGTGACAAATATGGCTTTAATTCGACTCAATGTCAATGTAATTTCTGTTATAAACGA
TCTGATAGAATCACTGCATGTAATGCACAAGGATCAACTTATGGATGGAATGACACAAAC
TGTAGTTGTGATTTTTGTTACAATCAAGCTGACAGAATCAACTCTTGTAACTTACTTGGT
TCCACTTATGGCTTTGATCCAATTCAATGCAGTTGTACTTTCTGTTATGGAAAAGCTGAT
CGTATTGCTGCATGCAATGCATCAGGCTCAGCTTATGCATGGAACGACACTAGTTGTCAA
TGTTATCTTATTCCTACAACCACTACCACTAGTACTACAACAACGACAACAACAACCACC
ACAACGACGTCAACTACAGCAGCTGTCACGAGCTCATCAAATTCTTCCACAACAACTGCA
GATCCATTCGCAAGTATACAGAAACTTGGAGCTCTTTTATCGACAAGTCAAAATGATACT
GGTTCTTTCGTTTCACATGTTGCATCTTCATTAACTGATGCATTCTCTCAAGCATTAGGC
GAAAATACTTGGAATGCTTACAAACAAGCATTGCTTGGAAATTGA
>g14042.t4 Gene=g14042 Length=415
MSFNSTICDCQCPNIACDGNQVVMKPNCTCQCPTAPRKCNDNQVWDPIACSCVCKDQPQC
AFNQVFNNSTCSCQCSTQPSCASYQTLNTNTCECDCTTDNSTSCNAQLPLYGWNSRKCNC
DFCPDNLTRKTLCESNANYKWNATNCSCQFCHTRNVDQAACTAKGSTFGWSESQCSCIFC
LNKDVRASQCDLLGSLYGWNDTTCNCDFCPNLNDRVNSCNALGDKYGFNSTQCQCNFCYK
RSDRITACNAQGSTYGWNDTNCSCDFCYNQADRINSCNLLGSTYGFDPIQCSCTFCYGKA
DRIAACNASGSAYAWNDTSCQCYLIPTTTTTSTTTTTTTTTTTTSTTAAVTSSSNSSTTT
ADPFASIQKLGALLSTSQNDTGSFVSHVASSLTDAFSQALGENTWNAYKQALLGN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g14042.t4 | Pfam | PF03128 | CXCXC repeat | 42 | 54 | 0.038 |
| 1 | g14042.t4 | Pfam | PF03128 | CXCXC repeat | 63 | 75 | 0.035 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed