Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14042 g14042.t7 TSS g14042.t7 34282435 34282435
chr_1 g14042 g14042.t7 isoform g14042.t7 34283183 34284352
chr_1 g14042 g14042.t7 exon g14042.t7.exon1 34283183 34284048
chr_1 g14042 g14042.t7 cds g14042.t7.CDS1 34283183 34284048
chr_1 g14042 g14042.t7 exon g14042.t7.exon2 34284127 34284352
chr_1 g14042 g14042.t7 cds g14042.t7.CDS2 34284127 34284352
chr_1 g14042 g14042.t7 TTS g14042.t7 34284547 34284547

Sequences

>g14042.t7 Gene=g14042 Length=1092
GTTTGCAAAGATCAGCCTCAATGTGCTTTTAATCAAGTTTTTAATAATTCTACTTGCTCG
TGTCAATGTTCAACACAACCATCATGTGCTTCGTATCAAACGTTAAACACTAACACATGT
GAATGTGACTGTACTACTGATAATAGCACATCATGCAATGCTCAACTCCCTTTATATGGT
TGGAATAGTAGAAAATGCAATTGTGATTTCTGTCCTGATAATCTAACTAGAAAAACACTT
TGTGAATCTAATGCTAATTACAAATGGAATGCCACAAACTGTTCATGTCAATTTTGTCAC
ACTCGAAATGTTGATCAAGCTGCTTGCACTGCTAAAGGTTCAACATTCGGATGGTCTGAA
TCACAGTGTAGCTGCATTTTCTGTCTTAATAAAGATGTTCGTGCAAGTCAATGTGATTTA
TTGGGATCATTATATGGCTGGAATGATACAACCTGCAATTGTGATTTCTGCCCTAACTTA
AATGATCGAGTAAACTCATGCAATGCTCTTGGTGACAAATATGGCTTTAATTCGACTCAA
TGTCAATGTAATTTCTGTTATAAACGATCTGATAGAATCACTGCATGTAATGCACAAGGA
TCAACTTATGGATGGAATGACACAAACTGTAGTTGTGATTTTTGTTACAATCAAGCTGAC
AGAATCAACTCTTGTAACTTACTTGGTTCCACTTATGGCTTTGATCCAATTCAATGCAGT
TGTACTTTCTGTTATGGAAAAGCTGATCGTATTGCTGCATGCAATGCATCAGGCTCAGCT
TATGCATGGAACGACACTAGTTGTCAATGTTATCTTATTCCTACAACCACTACCACTAGT
ACTACAACAACGACAACAACAACCACCACAACGACGTCAACTACAGCAGCTGTCACGAGC
TCATCAAATTCTTCCACAACAACTGCAGATCCATTCGCAAGTATACAGAAACTTGGAGCT
CTTTTATCGACAAGTCAAAATGATACTGGTTCTTTCGTTTCACATGTTGCATCTTCATTA
ACTGATGCATTCTCTCAAGCATTAGGCGAAAATACTTGGAATGCTTACAAACAAGCATTG
CTTGGAAATTGA

>g14042.t7 Gene=g14042 Length=363
VCKDQPQCAFNQVFNNSTCSCQCSTQPSCASYQTLNTNTCECDCTTDNSTSCNAQLPLYG
WNSRKCNCDFCPDNLTRKTLCESNANYKWNATNCSCQFCHTRNVDQAACTAKGSTFGWSE
SQCSCIFCLNKDVRASQCDLLGSLYGWNDTTCNCDFCPNLNDRVNSCNALGDKYGFNSTQ
CQCNFCYKRSDRITACNAQGSTYGWNDTNCSCDFCYNQADRINSCNLLGSTYGFDPIQCS
CTFCYGKADRIAACNASGSAYAWNDTSCQCYLIPTTTTTSTTTTTTTTTTTTSTTAAVTS
SSNSSTTTADPFASIQKLGALLSTSQNDTGSFVSHVASSLTDAFSQALGENTWNAYKQAL
LGN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g14042.t7 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 30 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed