General information for g14043.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alpha-1,3-fucosyltransferase C.
Parent gene
- The parent gene g14043 is located on chr_1: 34289659..34291082 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14043 | g14043.t1 | TSS | g14043.t1 | 34288420 | 34288420 |
| chr_1 | g14043 | g14043.t1 | isoform | g14043.t1 | 34288755 | 34290091 |
| chr_1 | g14043 | g14043.t1 | exon | g14043.t1.exon1 | 34288755 | 34289161 |
| chr_1 | g14043 | g14043.t1 | cds | g14043.t1.CDS1 | 34288755 | 34289161 |
| chr_1 | g14043 | g14043.t1 | exon | g14043.t1.exon2 | 34289227 | 34289405 |
| chr_1 | g14043 | g14043.t1 | cds | g14043.t1.CDS2 | 34289227 | 34289405 |
| chr_1 | g14043 | g14043.t1 | exon | g14043.t1.exon3 | 34289481 | 34290091 |
| chr_1 | g14043 | g14043.t1 | cds | g14043.t1.CDS3 | 34289481 | 34290091 |
| chr_1 | g14043 | g14043.t1 | TTS | g14043.t1 | 34291105 | 34291105 |
Sequences
>g14043.t1 Gene=g14043 Length=1197
ATGAAAATTATTCGAAGAACTTCATTGATTCTGTTGCTTATGACATCAACATTTTTGTTC
GCATTTCATCTAATTAACAATTATGTTTTCGAATGGTCAATTGCAAGATATAAATTGATT
GAATTAAAAAAAGAATTGACGAGTGATCGTGAGAAATTTTTTGTACTCTTTTGGACTAAA
TTTTTTGATATTCCATATTGGAATATGGGCAATGAAACAAATGGACCCGAATATTTAGAT
GAAATTAATTGCCCTGTCAATAATTGTGTCTTTACTCATAATAAAGAACTTATTGATCCA
ATTTATTATTATGATGCGATAGTTTTTCATGGAGCACAATCATGGGGTTTTATGGACTTG
CCTGCTATAAGAAGTACTCATCAACTTTACGTATTTGCATCTCAAGAATCACCTGCAGAA
ACTAAGCACAATTTAGTACTCGATGATGAATTTTATAATCTAACCATGAGTTATCGATTA
GATTCAGAAATTTTATGGAGTTATGCACGAATTTTTGATATTCAAACTGGACAATTTATT
GCGCCATCAAAGAATGCTAACTGGCAGCAACCGGAAAGAGTTGAAGTAACAACAACAGCA
ACAGATAAAAGCCTCAATTCAGTGTTCATGAAAAAGTCAAAAGAGGCGGCATGGATGGTT
TCACACTGCAATGTATTTTCAAAACGTGAAGATCTCGTGCGGAAACTACAACAATATATT
GATATTGATATTTATGGAAAGTGCGGCACCTTAGATTGTCCACGAGAAAAAACATCGGAA
TGCATTGAAAAATACAAAATTTATCTTTCATTTGAGAATGCTTTATGCTCAGATTATGTG
ACAGAGAAGCTCTTTGATATGATGAACAATTACATTTTACCAGTTGTCTTTAATGGAGTT
GGTAACATGTCGCACTTTCTTCCACCTAAATCTTATATCAATGCCAATGATTTCAGTAGT
GTTGAAACACTTGGAATGTTCTTACAAAATTTAATGAAAAATGAAACTGAATATTTAAGT
TATTTTTGGTGGAAGAGATATTATAAAATTGACACTAAATATATAAATGTGCATTCATTT
TGTGATTTATGCAAGAGATTAAATGAGAATAATGTGAATCAAAGAGTGCAGTATTATAAA
AGTATTAGTGAATGGTGGACTAAAGGAATTTGTGTTAATTCAAGAATCAAATTTTAA
>g14043.t1 Gene=g14043 Length=398
MKIIRRTSLILLLMTSTFLFAFHLINNYVFEWSIARYKLIELKKELTSDREKFFVLFWTK
FFDIPYWNMGNETNGPEYLDEINCPVNNCVFTHNKELIDPIYYYDAIVFHGAQSWGFMDL
PAIRSTHQLYVFASQESPAETKHNLVLDDEFYNLTMSYRLDSEILWSYARIFDIQTGQFI
APSKNANWQQPERVEVTTTATDKSLNSVFMKKSKEAAWMVSHCNVFSKREDLVRKLQQYI
DIDIYGKCGTLDCPREKTSECIEKYKIYLSFENALCSDYVTEKLFDMMNNYILPVVFNGV
GNMSHFLPPKSYINANDFSSVETLGMFLQNLMKNETEYLSYFWWKRYYKIDTKYINVHSF
CDLCKRLNENNVNQRVQYYKSISEWWTKGICVNSRIKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14043.t1 | Gene3D | G3DSA:3.40.50.11660 | - | 146 | 360 | 5.1E-36 |
| 3 | g14043.t1 | PANTHER | PTHR11929:SF217 | ALPHA 1,3 FUCOSYLTRANSFERASE-RELATED | 23 | 395 | 2.5E-98 |
| 4 | g14043.t1 | PANTHER | PTHR11929 | ALPHA- 1,3 -FUCOSYLTRANSFERASE | 23 | 395 | 2.5E-98 |
| 2 | g14043.t1 | Pfam | PF17039 | Fucosyltransferase, N-terminal | 53 | 168 | 3.0E-22 |
| 1 | g14043.t1 | Pfam | PF00852 | Glycosyltransferase family 10 (fucosyltransferase) C-term | 212 | 386 | 1.9E-55 |
| 9 | g14043.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 27 | - |
| 10 | g14043.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 8 | - |
| 11 | g14043.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 9 | 22 | - |
| 12 | g14043.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 23 | 27 | - |
| 8 | g14043.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 28 | 398 | - |
| 6 | g14043.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 49 | 387 | 1.16E-80 |
| 5 | g14043.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0008417 | fucosyltransferase activity | MF |
| GO:0006486 | protein glycosylation | BP |
KEGG
Orthology
- This transcript has been annotated with K14464 (alpha-1,3-fucosyltransferase [EC:2.4.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
