General information for g14043.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Alpha-1,3-fucosyltransferase C.
Parent gene
- The parent gene g14043 is located on chr_1: 34289659..34291082 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14043 | g14043.t3 | isoform | g14043.t3 | 34289485 | 34290365 |
| chr_1 | g14043 | g14043.t3 | exon | g14043.t3.exon1 | 34289485 | 34290365 |
| chr_1 | g14043 | g14043.t3 | cds | g14043.t3.CDS1 | 34289522 | 34290091 |
| chr_1 | g14043 | g14043.t3 | TTS | g14043.t3 | 34291105 | 34291105 |
| chr_1 | g14043 | g14043.t3 | TSS | g14043.t3 | NA | NA |
Sequences
>g14043.t3 Gene=g14043 Length=881
AACAACAGCAACAGATAAAAGCCTCAATTCAGTGTTCATGAAAAAGTCAAAAGAGGCGGC
ATGGATGGTTTCACACTGCAATGTATTTTCAAAACGTGAAGATCTCGTGCGGAAACTACA
ACAATATATTGATATTGATATTTATGGAAAGTGCGGCACCTTAGATTGTCCACGAGAAAA
AACATCGGAATGCATTGAAAAATACAAAATTTATCTTTCATTTGAGAATGCTTTATGCTC
AGATTATGTGACAGAGAAGCTCTTTGATATGATGAACAATTACATTTTACCAGTTGTCTT
TAATGGAGTTGGTAACATGTCGCACTTTCTTCCACCTAAATCTTATATCAATGCCAATGA
TTTCAGTAGTGTTGAAACACTTGGAATGTTCTTACAAAATTTAATGAAAAATGAAACTGA
ATATTTAAGTTATTTTTGGTGGAAGAGATATTATAAAATTGACACTAAATATATAAATGT
GCATTCATTTTGTGATTTATGCAAGAGATTAAATGAGAATAATGTGAATCAAAGAGTGCA
GTATTATAAAAGTATTAGTGAATGGTGGACTAAAGGAATTTGTGTTAATTCAAGAATCAA
ATTTTAAAAAAAATCAAATTTGTGTCTTAAAAAAGTCATTCAATTAGCGTCCATTTAAAT
TATAAGATTATTAATTTTATTGATGAGAAATTTGAAAATTTTCGGAAATTCATAAAGACA
ATGTAAGTGATGATAAAAATAAATCTTAAATAATGTGATGAAATTGAAATTTTTCCATAG
CTCGATATTAATGTAAATATAAATTAAAAACATCTTACAAAGAAAACTACATTTGGCAAA
ACATTCAAAAACAACGAAAATAGAGGATAAAGAAAAACAAA
>g14043.t3 Gene=g14043 Length=189
MKKSKEAAWMVSHCNVFSKREDLVRKLQQYIDIDIYGKCGTLDCPREKTSECIEKYKIYL
SFENALCSDYVTEKLFDMMNNYILPVVFNGVGNMSHFLPPKSYINANDFSSVETLGMFLQ
NLMKNETEYLSYFWWKRYYKIDTKYINVHSFCDLCKRLNENNVNQRVQYYKSISEWWTKG
ICVNSRIKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14043.t3 | Gene3D | G3DSA:3.40.50.11660 | - | 1 | 151 | 0 |
| 2 | g14043.t3 | PANTHER | PTHR11929:SF217 | ALPHA 1,3 FUCOSYLTRANSFERASE-RELATED | 2 | 186 | 0 |
| 3 | g14043.t3 | PANTHER | PTHR11929 | ALPHA- 1,3 -FUCOSYLTRANSFERASE | 2 | 186 | 0 |
| 1 | g14043.t3 | Pfam | PF00852 | Glycosyltransferase family 10 (fucosyltransferase) C-term | 3 | 177 | 0 |
| 4 | g14043.t3 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 2 | 178 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0008417 | fucosyltransferase activity | MF |
| GO:0006486 | protein glycosylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
