General information for g14061.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dynein light chain 1, axonemal.
Parent gene
- The parent gene g14061 is located on chr_1: 34453633..34453946 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14061 | g14061.t1 | TSS | g14061.t1 | 34453289 | 34453289 |
| chr_1 | g14061 | g14061.t1 | isoform | g14061.t1 | 34453314 | 34453946 |
| chr_1 | g14061 | g14061.t1 | exon | g14061.t1.exon1 | 34453314 | 34453580 |
| chr_1 | g14061 | g14061.t1 | cds | g14061.t1.CDS1 | 34453314 | 34453580 |
| chr_1 | g14061 | g14061.t1 | exon | g14061.t1.exon2 | 34453635 | 34453946 |
| chr_1 | g14061 | g14061.t1 | cds | g14061.t1.CDS2 | 34453635 | 34453946 |
| chr_1 | g14061 | g14061.t1 | TTS | g14061.t1 | 34454013 | 34454013 |
Sequences
>g14061.t1 Gene=g14061 Length=579
ATGTCTCAAAGACCAACAACTATAAAAGAAGCAATTGAAAGATGGGAAAAGGAGAATGAA
ATTAAAGCATCAGAAGCTAAAGATGTTGGATTACAATTTCAAATTCCACCCATTGAAAGA
ATGAATTTTGATCTTGCTATTCTCGTCAATTGTGAAAAATTGAGTTTATCAACGAATAAT
ATCGACCGAATTCTCTTGCCACCATCACTTAAGAATCTTAAAATATTGGCATTAGGGAGA
AATAATATTAAGACATTAATTGGGCTGGAAGTTCTTGCTGAAACTTTAGAAGAATTGTGG
ATCAGTTATAATTCTATTGACAAACTCAGAGGAATTGAAGTTATGAAAAATTTAAAAAAA
TTTTACATAGCTCACAATAACGTTCGAGATTGGAGTGAATTTATGAGGTTGTCAGAACTA
AAAGAAAATCTTCGTGAATTAATTTTCATTGGAAATCCTTTAGTTGAAAATATAGATAAA
AAAGTCTATCGGAATGAAATTTTTCATCGTTTGCCTTTCTTAAAAATGCTTGATGGTGAA
CTTCTTTTTTTTGTAACTGAATTTATCTCTGCAGATTAA
>g14061.t1 Gene=g14061 Length=192
MSQRPTTIKEAIERWEKENEIKASEAKDVGLQFQIPPIERMNFDLAILVNCEKLSLSTNN
IDRILLPPSLKNLKILALGRNNIKTLIGLEVLAETLEELWISYNSIDKLRGIEVMKNLKK
FYIAHNNVRDWSEFMRLSELKENLRELIFIGNPLVENIDKKVYRNEIFHRLPFLKMLDGE
LLFFVTEFISAD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14061.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 183 | 0.000 |
| 1 | g14061.t1 | PANTHER | PTHR15454:SF33 | DYNEIN LIGHT CHAIN 1, AXONEMAL | 4 | 181 | 0.000 |
| 2 | g14061.t1 | PANTHER | PTHR15454 | NISCHARIN RELATED | 4 | 181 | 0.000 |
| 11 | g14061.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 50 | 71 | 6.079 |
| 9 | g14061.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 72 | 93 | 7.627 |
| 8 | g14061.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 95 | 116 | 7.358 |
| 10 | g14061.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 117 | 138 | 6.295 |
| 5 | g14061.t1 | SMART | SM00365 | LRR_sd22_2 | 70 | 91 | 8.200 |
| 4 | g14061.t1 | SMART | SM00365 | LRR_sd22_2 | 93 | 114 | 21.000 |
| 6 | g14061.t1 | SMART | SM00365 | LRR_sd22_2 | 115 | 136 | 510.000 |
| 3 | g14061.t1 | SUPERFAMILY | SSF52058 | L domain-like | 35 | 181 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
