General information for g14064.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative N-acetylglucosamine-6-sulfatase.
Parent gene
- The parent gene g14064 is located on chr_1: 34460141..34461695 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14064 | g14064.t2 | TTS | g14064.t2 | 34459963 | 34459963 |
| chr_1 | g14064 | g14064.t2 | isoform | g14064.t2 | 34460141 | 34460672 |
| chr_1 | g14064 | g14064.t2 | exon | g14064.t2.exon1 | 34460141 | 34460672 |
| chr_1 | g14064 | g14064.t2 | cds | g14064.t2.CDS1 | 34460141 | 34460671 |
| chr_1 | g14064 | g14064.t2 | TSS | g14064.t2 | 34461676 | 34461676 |
Sequences
>g14064.t2 Gene=g14064 Length=532
AGGACCGAACGTTCCAGTGAAAAAAGTAGTTCAATCTCCTGTTGCTCTTATTGATTTAGC
TCCAACAATTCTTAATTGGGCTGAAATAAATTATAAGAGTGAGAATTTTGATGGACAATC
TTTTGATAAGTTGATTAATGAAAAATTTTTCAATGAGAATTTTATAAATGAGAGGCAAAT
TTTAATAGAGCATTGGGGAGAAGGAAATGTTGAAACATTCAATCCTGAATGTCCATGGAA
GAAAAGCCAAAGATTAAGTGAATGCCAGATTGAAGCAGAATGTAAATGTCAAGATTCTTG
GAATAATACTTATGTATGTGTCAGACATTTGTCAAAAGATATAAATTTCTTGTATTGCAC
TTTCCATGATCGAGAACATTTCAATGAAGCTTATGATTTAGGTGAAGATGAATTTCAATT
GAACAATGTTGCATACGATATTCTACCATCAATTCAAGCTCGCTATCAAATTATTGTTGA
AAATTTAAGAAATTGTCTTGGTGAAGATTGTAAAATTGTTAAAAATGTTTGA
>g14064.t2 Gene=g14064 Length=176
GPNVPVKKVVQSPVALIDLAPTILNWAEINYKSENFDGQSFDKLINEKFFNENFINERQI
LIEHWGEGNVETFNPECPWKKSQRLSECQIEAECKCQDSWNNTYVCVRHLSKDINFLYCT
FHDREHFNEAYDLGEDEFQLNNVAYDILPSIQARYQIIVENLRNCLGEDCKIVKNV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g14064.t2 | Gene3D | G3DSA:3.40.720.10 | Alkaline Phosphatase | 1 | 143 | 0 |
| 1 | g14064.t2 | PANTHER | PTHR43108 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER | 1 | 171 | 0 |
| 2 | g14064.t2 | PANTHER | PTHR43108:SF13 | SD21168P | 1 | 171 | 0 |
| 3 | g14064.t2 | SUPERFAMILY | SSF53649 | Alkaline phosphatase-like | 2 | 170 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
