General information for g14092.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like protein.
Parent gene
- The parent gene g14092 is located on chr_1: 34580505..34581493 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14092 | g14092.t13 | TTS | g14092.t13 | 34580462 | 34580462 |
| chr_1 | g14092 | g14092.t13 | isoform | g14092.t13 | 34580505 | 34581493 |
| chr_1 | g14092 | g14092.t13 | exon | g14092.t13.exon1 | 34580505 | 34581324 |
| chr_1 | g14092 | g14092.t13 | cds | g14092.t13.CDS1 | 34580505 | 34581324 |
| chr_1 | g14092 | g14092.t13 | exon | g14092.t13.exon2 | 34581389 | 34581493 |
| chr_1 | g14092 | g14092.t13 | cds | g14092.t13.CDS2 | 34581389 | 34581390 |
| chr_1 | g14092 | g14092.t13 | TSS | g14092.t13 | 34581520 | 34581520 |
Sequences
>g14092.t13 Gene=g14092 Length=925
ATGTTAAAAAGTAAAAATTTAATAAATTTAATAGTTTTAAGCAAGAGATGCTTCTCAGTT
AAACCAAAAAGTGAAATTTCAAATGCTCTTTATTGTGCAAATAATGAAATTCGATTATGA
GAATTTTTTGTGTACACTATTGATTGGAAATGAGGAGAAAAGGAGAAACGCATTCGCTTT
GAGAGCTCTAAATGTTGAACTTGCCAGAATACCATCAGTTGTGTCAGATAATAAAATTGC
TTTAATGCGACTCAAATTTTGGGAAGATGCAATAAAAAAATTATTCAATAACAAAAAATC
TCAAAATATATCATTGCCAAAACATCCAGTTGTAGAAGAATTAGGTTTTATTATGCAACA
ATCTAGTTTAACAAAGAGAAACTTTGATAGATTAATAAATGCAAGAAAGGCTGCTAATTT
AAATTTTGTTACAATGAAACAGATGGAGCAATATGCAGAAGAGACAGTGAGTTCTCTTAA
TTATCTCTTATTAGAGACACTTGATTGTAAAAATGTCAATGCTGACCATGCAGCATCTCA
TTTGGGTAAAGCACAAGGAATATCAAATTTATTACGATCAATTTATTCATTAAGAAGTTA
TCAACATTTACCCATTCCTCAAGAATTGTTAATCAAACATGGAATATCACAAGAGAGATT
TTATCGAAGTAAAGAAAATGATAAAGCAGTAGAAAACACAGTTTTTGATGTTGCAACACT
TGCTCATCAACATTTAGAAAAATCTATAGCTTTGATGTCAAAAGTTCCAAAAGAAGCTAA
AATTTTATTTTTGCCAATGGTGTCAACTAAAAGATTTCTTGAGAAGCTAAGGAAAGTAAA
TTTTAATTTGACTGATAAAAGTATTGGAAAAAGAGACAATTTACTACCATTAGTACTTTA
TTGGAACAAATTTAAAGGTCTGTGA
>g14092.t13 Gene=g14092 Length=273
MKFDYENFLCTLLIGNEEKRRNAFALRALNVELARIPSVVSDNKIALMRLKFWEDAIKKL
FNNKKSQNISLPKHPVVEELGFIMQQSSLTKRNFDRLINARKAANLNFVTMKQMEQYAEE
TVSSLNYLLLETLDCKNVNADHAASHLGKAQGISNLLRSIYSLRSYQHLPIPQELLIKHG
ISQERFYRSKENDKAVENTVFDVATLAHQHLEKSIALMSKVPKEAKILFLPMVSTKRFLE
KLRKVNFNLTDKSIGKRDNLLPLVLYWNKFKGL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14092.t13 | Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 1 | 249 | 0 |
| 2 | g14092.t13 | PANTHER | PTHR21181:SF13 | NADH DEHYDROGENASE (UBIQUINONE) COMPLEX I, ASSEMBLY FACTOR 6 | 2 | 271 | 0 |
| 3 | g14092.t13 | PANTHER | PTHR21181 | - | 2 | 271 | 0 |
| 1 | g14092.t13 | Pfam | PF00494 | Squalene/phytoene synthase | 4 | 250 | 0 |
| 4 | g14092.t13 | SUPERFAMILY | SSF48576 | Terpenoid synthases | 6 | 265 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K18163 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
