General information for g14095.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Stromal interaction molecule-like protein.
Parent gene
- The parent gene g14095 is located on chr_1: 34592903..34594434 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14095 | g14095.t1 | isoform | g14095.t1 | 34587910 | 34592903 |
| chr_1 | g14095 | g14095.t1 | exon | g14095.t1.exon1 | 34587910 | 34588174 |
| chr_1 | g14095 | g14095.t1 | cds | g14095.t1.CDS1 | 34587910 | 34588174 |
| chr_1 | g14095 | g14095.t1 | exon | g14095.t1.exon2 | 34588973 | 34589146 |
| chr_1 | g14095 | g14095.t1 | cds | g14095.t1.CDS2 | 34588973 | 34589146 |
| chr_1 | g14095 | g14095.t1 | exon | g14095.t1.exon3 | 34589216 | 34589510 |
| chr_1 | g14095 | g14095.t1 | cds | g14095.t1.CDS3 | 34589216 | 34589510 |
| chr_1 | g14095 | g14095.t1 | exon | g14095.t1.exon4 | 34591102 | 34591149 |
| chr_1 | g14095 | g14095.t1 | cds | g14095.t1.CDS4 | 34591102 | 34591149 |
| chr_1 | g14095 | g14095.t1 | exon | g14095.t1.exon5 | 34591271 | 34591467 |
| chr_1 | g14095 | g14095.t1 | cds | g14095.t1.CDS5 | 34591271 | 34591467 |
| chr_1 | g14095 | g14095.t1 | exon | g14095.t1.exon6 | 34591530 | 34592070 |
| chr_1 | g14095 | g14095.t1 | cds | g14095.t1.CDS6 | 34591530 | 34592070 |
| chr_1 | g14095 | g14095.t1 | exon | g14095.t1.exon7 | 34592130 | 34592478 |
| chr_1 | g14095 | g14095.t1 | cds | g14095.t1.CDS7 | 34592130 | 34592478 |
| chr_1 | g14095 | g14095.t1 | exon | g14095.t1.exon8 | 34592537 | 34592676 |
| chr_1 | g14095 | g14095.t1 | cds | g14095.t1.CDS8 | 34592537 | 34592676 |
| chr_1 | g14095 | g14095.t1 | exon | g14095.t1.exon9 | 34592843 | 34592903 |
| chr_1 | g14095 | g14095.t1 | cds | g14095.t1.CDS9 | 34592843 | 34592903 |
| chr_1 | g14095 | g14095.t1 | TSS | g14095.t1 | NA | NA |
| chr_1 | g14095 | g14095.t1 | TTS | g14095.t1 | NA | NA |
Sequences
>g14095.t1 Gene=g14095 Length=2070
ATGGATATAAAAGATGATTTTTATTTTTCTACTCTTCTCACTTACTCACTAACTTGTATT
TGTGCAGCTTCCGGTTCATGTGATACCGAAAATTTAGATTGCAATGACAACGATTATTTG
GGATTAGAAGCAATACGTTCACTGCATAGACAACTTGACGATGATGATAATGGTGACATA
GATTTGTCAGAATCAGATGATTTTTTGCGTGAAGAATTAAAATATGAAGGTGGATACGAG
AAACGTCATCGAGCGTTTCATTTTAACGACGATATGCATATCTCAGTAAAAGAATTGTGG
GAAGCTTGGCTTAAAAGTGAGGTTCACAATTGGACACTTGATCAAACTTGCGAGTGGTTG
ATTCAAAGTGTTCAACTTCCACAATATGTCAATTTATTCAAGAAACATAAAATTGATGGA
AAAGTTCTTCCTAGACTCGCTGTCAACAATCTTCATTTTGTTAGCAATATTTTGGGTATA
AAAGATCCTATTCATAAGCAAAAGATTGCATTGAAAGCGATGGATGCAGTTTTATTTGGA
CCACCAAGAGAAACGGGAACAAGATGGAAAGATATTGTTTTGGTAACGCTCTTGTTAACT
GCAATTATTGGAAGCTGGTATGCTTATCAGCAAAACAAGAATGCTAAAGGTCATTTAAAG
AGAATGGCCAGAGATATGGAACAATTGCATAAAGCAGAGAAAGAACTCTCAAAAATGCAA
GCAGAACTCGAACGTGCTCGTATCGAACAAGAGAATGTTGGCAAAGAGAAAATGGATCTT
GAAAGACGATTGAAAGAAGCTCCAATAAAAAATTCCAGTTCTGAAATGGAATTGCAACAA
CTTAAACAAGAAATTGAAATTTTAAGAAATGAATTATCAAAGGCAGAAGTTGAACTTTTT
GATCATCATTGGACACCACCACAAGGTCTACAGCATTGGTTGCAATTGACGTATGAACTT
GAAACAAAGAATCATCAAAAGAAAAGAATTGCAGCTGAAAGTCAATTACTACAAGCACGT
GAAGCATGTGAAAAACTTAGAAAGAAAAGATCAAGTTTTGTTGGAGCTTTCGTGTCAACA
CATGGAAAAAGCATTGATGATGTCGACAGAACAATTGTTGAAGCACGAAATGCATTGAGT
GAAGTGACAAATGAGCTTCAAGAACGACTTCATCGTTGGAAACAAATTGAAACAATATTA
GGATGTAATATAGTAAATAATAATGGAATTGCATATTTAGAAAATATGCTATATCGATCA
AATGGAACGTCGAGTAAATCCTCAAGAGGACGCATATCAAGCAGTCAGGATGATCTTGAT
GATGAATCAATTCAAGGTTTTCTTACTGATGTCAAATATCTTCATCGAGAATCTTCCAGT
GAAGATGACGAGCGTGAATCTGTTACTTTTATTGTCGGTTCTTCTTCATTTGATGAGCCA
CCGACATCTTTACATGCAAACTCATATTTACCTTCATCAGCACCTTCCGTTACTCAGACT
TCTTCCACTTCTGCTCCATCAAATTCACTCGTTCCAATAACTACATCTGTGAACACGATA
AATGTATTCAGACAAACACTTGCTAATGCACCATTCCCTCTGATAATGCATCAGGGTACT
TCTTTTGAGAGTACTAGTACATCAAATGAAGAGACACGCTCAAATATCTCATCGAGCTCA
GATAGAGCCATTGTTCCACCGCCACCATCAAGAGCTAAAAAGCAAACTTCGTTGCCACCA
TTTCCATTGCAATCAAATCAAAAAGCTCCAATGCCTCCTCCACGAAAGAATTATTCAAGC
CAGAACATCATCATGCATAGCACCCAACCAAGCTTCTTGGAGTCCATTGGATCCACTCTT
CCTTCAACAGCGGCTCTCATTAACACAACAAACAAATACAATTCAATCACCGATAATAAA
TTATCTTCGATCAATGACGACAACCAATCTACAGCCTCATCATCATCTGAAAGAACTGAC
GATGCCGATAAGAAACGCAAACGAAGACTCTTCCCATTTGGAAGTGGTAACAAAAAGTCA
AGCAAAAGCAAAACTAAGTCGAGCTCATGA
>g14095.t1 Gene=g14095 Length=689
MDIKDDFYFSTLLTYSLTCICAASGSCDTENLDCNDNDYLGLEAIRSLHRQLDDDDNGDI
DLSESDDFLREELKYEGGYEKRHRAFHFNDDMHISVKELWEAWLKSEVHNWTLDQTCEWL
IQSVQLPQYVNLFKKHKIDGKVLPRLAVNNLHFVSNILGIKDPIHKQKIALKAMDAVLFG
PPRETGTRWKDIVLVTLLLTAIIGSWYAYQQNKNAKGHLKRMARDMEQLHKAEKELSKMQ
AELERARIEQENVGKEKMDLERRLKEAPIKNSSSEMELQQLKQEIEILRNELSKAEVELF
DHHWTPPQGLQHWLQLTYELETKNHQKKRIAAESQLLQAREACEKLRKKRSSFVGAFVST
HGKSIDDVDRTIVEARNALSEVTNELQERLHRWKQIETILGCNIVNNNGIAYLENMLYRS
NGTSSKSSRGRISSSQDDLDDESIQGFLTDVKYLHRESSSEDDERESVTFIVGSSSFDEP
PTSLHANSYLPSSAPSVTQTSSTSAPSNSLVPITTSVNTINVFRQTLANAPFPLIMHQGT
SFESTSTSNEETRSNISSSSDRAIVPPPPSRAKKQTSLPPFPLQSNQKAPMPPPRKNYSS
QNIIMHSTQPSFLESIGSTLPSTAALINTTNKYNSITDNKLSSINDDNQSTASSSSERTD
DADKKRKRRLFPFGSGNKKSSKSKTKSSS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g14095.t1 | CDD | cd09504 | SAM_STIM-1,2-like | 107 | 180 | 4.45507E-41 |
| 16 | g14095.t1 | CDD | cd11722 | SOAR | 310 | 401 | 5.54262E-42 |
| 10 | g14095.t1 | Coils | Coil | Coil | 212 | 263 | - |
| 8 | g14095.t1 | Coils | Coil | Coil | 271 | 298 | - |
| 9 | g14095.t1 | Coils | Coil | Coil | 329 | 349 | - |
| 11 | g14095.t1 | Coils | Coil | Coil | 365 | 385 | - |
| 6 | g14095.t1 | Gene3D | G3DSA:1.10.238.180 | - | 36 | 112 | 5.1E-31 |
| 7 | g14095.t1 | Gene3D | G3DSA:1.10.150.50 | Transcription Factor | 113 | 180 | 3.0E-28 |
| 5 | g14095.t1 | Gene3D | G3DSA:1.20.5.340 | - | 215 | 303 | 1.2E-15 |
| 19 | g14095.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 595 | - |
| 20 | g14095.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 564 | - |
| 21 | g14095.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 595 | - |
| 18 | g14095.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 689 | - |
| 3 | g14095.t1 | PANTHER | PTHR15136 | STROMAL INTERACTION MOLECULE HOMOLOG | 25 | 684 | 1.2E-160 |
| 1 | g14095.t1 | Pfam | PF07647 | SAM domain (Sterile alpha motif) | 108 | 175 | 1.3E-12 |
| 2 | g14095.t1 | Pfam | PF16533 | STIM1 Orai1-activating region | 304 | 404 | 2.4E-41 |
| 12 | g14095.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 191 | - |
| 14 | g14095.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 192 | 209 | - |
| 13 | g14095.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 210 | 689 | - |
| 22 | g14095.t1 | ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 27 | 5.0 |
| 23 | g14095.t1 | ProSiteProfiles | PS50105 | SAM domain profile. | 111 | 169 | 11.857 |
| 17 | g14095.t1 | SMART | SM00454 | SAM_4 | 108 | 179 | 7.7E-6 |
| 4 | g14095.t1 | SUPERFAMILY | SSF47769 | SAM/Pointed domain | 100 | 181 | 1.1E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0005246 | calcium channel regulator activity | MF |
KEGG
Orthology
- This transcript has been annotated with K16059 (stromal interaction molecule 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
