General information for g14104.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative tRNA dimethylallyltransferase.
Parent gene
- The parent gene g14104 is located on chr_1: 34642597..34653190 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14104 | g14104.t2 | isoform | g14104.t2 | 34642597 | 34653190 |
| chr_1 | g14104 | g14104.t2 | exon | g14104.t2.exon1 | 34642597 | 34642914 |
| chr_1 | g14104 | g14104.t2 | cds | g14104.t2.CDS1 | 34642597 | 34642914 |
| chr_1 | g14104 | g14104.t2 | TTS | g14104.t2 | 34642616 | 34642616 |
| chr_1 | g14104 | g14104.t2 | exon | g14104.t2.exon2 | 34651333 | 34651470 |
| chr_1 | g14104 | g14104.t2 | cds | g14104.t2.CDS2 | 34651333 | 34651419 |
| chr_1 | g14104 | g14104.t2 | exon | g14104.t2.exon3 | 34651648 | 34651828 |
| chr_1 | g14104 | g14104.t2 | exon | g14104.t2.exon4 | 34652920 | 34653190 |
| chr_1 | g14104 | g14104.t2 | TSS | g14104.t2 | 34653190 | 34653190 |
Sequences
>g14104.t2 Gene=g14104 Length=908
AGTATGTTATTATTTTTTGTAAACAACTTTTAGTGAATAAATTTTTAGTCTCAACTTTAA
TAATAAATACACAAATTGAACAAAATATAAGTGATATTAGTGATAATTTAGTGCAAAATT
TATTATAATATGTTGTTTTCATCACACAACAATGGTGTTTTTTTATGAAATTTCCTCAAT
TCTTCAATTCACATTTTTATAGTTGTGTGATCTCAGTAAATGAAGAAATTATTGAGAATA
ATATCCTCATTAGTAAATTATAAATTCATTATCTCTTGTAAGTGAGTGAATCTAAAGAAG
AAGAATAAGAAAGTGAAATCAGAGAATTATGTTGCGAAAAGTTCCATTAATAGTTATTCT
GGGTTCAACTGGAACAGGGAAGACAAAACTTTCAATAGAGCTCGCTCGTCGATTTAATGC
TGAAATAATTTCTGCCGATTCTATGCAAGTTAGTGTATAAAGGACTGAGCATCGCAACTG
CAAAAGCCACAAATGATGAACAAATGCAAGCACCACACCATTTACTAGATGTTGCTACCC
CACATGAGCCATTTACCGTAACGCACTTTCGTGATAAGGCTCTACCGATAATAGATAATT
TATTGCAACGATCAAAGAGTCCGATCATTGTTGGTGGTACAAACTATTACATCGAAAGCA
TTCTTTGGCACAATCTGGTTGCGCCGAGTATTGGATATAAGAGAAAAATTGATGATTATG
ATAATGATGGCAATAGCGATGGAGATGAATGTTTGAGTCAAGAGATCAGAGATTTTGTGA
GTGACTCAGCAATGGTTGAAAAAATGTTGGACATGGAATCGACAAAGCTTTATGAATATC
TCAAACTGATTGACCCTTTAACAGCAAAAAGGTTGCATCCTAATAACAAAAGAAAAATTA
TGAGGTGA
>g14104.t2 Gene=g14104 Length=134
MQAPHHLLDVATPHEPFTVTHFRDKALPIIDNLLQRSKSPIIVGGTNYYIESILWHNLVA
PSIGYKRKIDDYDNDGNSDGDECLSQEIRDFVSDSAMVEKMLDMESTKLYEYLKLIDPLT
AKRLHPNNKRKIMR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g14104.t2 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 94 | 0 |
| 5 | g14104.t2 | Gene3D | G3DSA:1.10.20.140 | - | 95 | 134 | 0 |
| 2 | g14104.t2 | PANTHER | PTHR11088 | TRNA DIMETHYLALLYLTRANSFERASE | 2 | 134 | 0 |
| 3 | g14104.t2 | PANTHER | PTHR11088:SF25 | TRNA DIMETHYLALLYLTRANSFERASE | 2 | 134 | 0 |
| 1 | g14104.t2 | Pfam | PF01715 | IPP transferase | 2 | 134 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
