General information for g14108.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14108 is located on chr_1: 34731941..34733598 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14108 | g14108.t3 | TSS | g14108.t3 | 34731437 | 34731437 |
| chr_1 | g14108 | g14108.t3 | isoform | g14108.t3 | 34731941 | 34733268 |
| chr_1 | g14108 | g14108.t3 | exon | g14108.t3.exon1 | 34731941 | 34733268 |
| chr_1 | g14108 | g14108.t3 | cds | g14108.t3.CDS1 | 34732153 | 34732851 |
| chr_1 | g14108 | g14108.t3 | TTS | g14108.t3 | 34733629 | 34733629 |
Sequences
>g14108.t3 Gene=g14108 Length=1328
TCCAAAGTTGGAAAGATGAATATTCGCAAGTTAAGAAAGATCCCATAAAATACATAAATA
ACCCAATTAACGCATTTCATGTAATTAAGCGTACAACTGAAGACATTGACTTATTTGAGT
TACGAATTAAGAAATTAATTGATCAATTCACCAGCAGCATTTCAAGCATAAGAGCAACAA
ATAATGATCTCACTGGTACCGTTGAAGGAATAATGCGATTGCAGACAATTTATCATTTAA
AAACTGCTGATATAATAAATGGAATAATCGATGGAGATAAAACAAATGAGAAACTTAAAC
CTCATGATCTTTTCACAATAGCACGTGAAGGATTAAAAATTCAAGATAAATCTTATTTTG
TGCATGAATATTTATACCATTTACAAAAGTCATTAGAAAATAATGAAGATGAATTTGATG
AAGTTGATTTAGATGAATTTTCTGAAATTGTCGAAATTACTTTAAATTCTACTATGATTG
ATCCATTTGATGAATCTTTTGAAAAGAATGGAGCTTATACTGTTCATAAAGAAAATGTCA
TTTATAGTCAAGGATGTCGTCAGAAAATTCAAAAAACTCCAAAAGAAGCAAAAGATCTCA
AATGTCGTTATGTGTCGAATTCTGCATTTTCAAAAATTGCTCCATTTAAAGTCATCGAAG
CTGACCATCATTCAAATTTGGTTGTTTTTCTTGATGTCATTTCTGATAATGAAATTGAAA
TGATTAAAAATATTTCAAGTTCTAAATTAGGTAGAGGTGGAGTTTTTGTTGAAGAAAAAA
GTACAAAAACAGGATTTTCTAACACTCGAGTTTCACAAATTAGTTGGCATTATGAACATG
AACATGAAATTGTTGCCAGAATTTCTAGACGAGTTGAAGTAAAAAATGTGGAAGGAATTA
AATTTCAATAATTTTTAATTAAATAATTTTAGGACATGACTGGTTTAAGTACCAAAACAG
CTGAACCACTACAAGTTCAAAATTATGGTATTGCTGGTCACTATAGCTTACATTGGGACC
ATATGATTTGGCGAAATGAACCATTCAATTTAGGAACTGGAAATAGAATTGCAACCTTGC
TGTTTTATGTGAGTAGTTTTGAATTCTCTTAAGAATATTTCTTTACTCTACTTTAATGAT
CAATTTATTTAACTGTGTATTTTTATATTAAAAAATGTAATATTACTTGAAGAATATTTT
GTTTTAAAAAAGATTCAAGTTTAAAAAGTTCGTTGAATTTTTATTTTTTAATAAAATCAG
TTAAATTAGGTTAAATGTTAAAAGTAAAGCAAAATAATGAAGAAAGATAATAATTATTAA
TTTATAGA
>g14108.t3 Gene=g14108 Length=232
MRLQTIYHLKTADIINGIIDGDKTNEKLKPHDLFTIAREGLKIQDKSYFVHEYLYHLQKS
LENNEDEFDEVDLDEFSEIVEITLNSTMIDPFDESFEKNGAYTVHKENVIYSQGCRQKIQ
KTPKEAKDLKCRYVSNSAFSKIAPFKVIEADHHSNLVVFLDVISDNEIEMIKNISSSKLG
RGGVFVEEKSTKTGFSNTRVSQISWHYEHEHEIVARISRRVEVKNVEGIKFQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g14108.t3 | Gene3D | G3DSA:1.25.40.10 | - | 1 | 107 | 0.0e+00 |
| 4 | g14108.t3 | Gene3D | G3DSA:2.60.120.620 | q2cbj1_9rhob like domain | 147 | 231 | 3.5e-06 |
| 1 | g14108.t3 | PANTHER | PTHR10869:SF151 | FI16820P1-RELATED | 1 | 222 | 0.0e+00 |
| 2 | g14108.t3 | PANTHER | PTHR10869 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT | 1 | 222 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed