General information for g14109.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14109 is located on chr_1: 34741010..34743733 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14109 | g14109.t1 | TSS | g14109.t1 | 34739868 | 34739868 |
| chr_1 | g14109 | g14109.t1 | isoform | g14109.t1 | 34739937 | 34741010 |
| chr_1 | g14109 | g14109.t1 | exon | g14109.t1.exon1 | 34739937 | 34740059 |
| chr_1 | g14109 | g14109.t1 | cds | g14109.t1.CDS1 | 34739937 | 34740059 |
| chr_1 | g14109 | g14109.t1 | exon | g14109.t1.exon2 | 34740123 | 34741010 |
| chr_1 | g14109 | g14109.t1 | cds | g14109.t1.CDS2 | 34740123 | 34741010 |
| chr_1 | g14109 | g14109.t1 | TTS | g14109.t1 | 34741116 | 34741116 |
Sequences
>g14109.t1 Gene=g14109 Length=1011
ATGGATGAGAACTTAAATAGTTTTTTAGATAAATGTCGATGTTGTCTAGAAGAAATTACA
TTAGCAAAAATAGAGATTGATAATCTCATAGTAAGAAAATATTTTGAAATGACTCAATTA
AATCTTGCAACATCAAATTTACTGCCGTCTTTTATTTGTGTTGATTGCTATGAAATTCTT
ATATCTTATTCAGACATTCGAACAAAATTTATAGAAAATCATCAGAAACTGGAAGAAAAA
TTTGTACAGAATGAAACTTATGAACTTATAGAAGAGGAAGAAGCTTGTATTGAATATGAA
GAAATTGAAGTTAAAGTAGAAGAACAAGGGTACACAACAGACTTACATGAAATTATTGAA
GAAATTCCAGTTGAAGAAATTTCTTATTCTGAAAAAAATGAAAAAGAAAATGAAGATTCT
GAAGAGGAAGAGGAATTAAAATTAGAAGACATCGTAAAGCCTGAATTTTTGCATTATTGC
TTACCTAAAAATGAACCTGAAAATAGAAAATCAAAAATTTCTCAAAAATCATATTCTGTC
AAAGAAAATCGAAATAATAAGAAAAATGATTTTATGTGTGAAGAATGTGGGAAATTATTT
ACAAATCCGGTATCTGTAAAACAGCACATAACTCTCGTTCATAGAAAAATAAAATTTAAT
TGTGATGTTGAAAATTGCGGACGAGTTTTTACAACTCAACTGCACCTATCGAAACATAAA
GCAGCGTTTCATAATAATAGTAACACAATTCCATGTCATATTTGTAATAAAAGATTTCAT
AGCAAAACTGAATTAAATTCTCACATGAATTCATTACATCCTGATGGCAATAATGAAGAG
TACAAATGTGAAATTTGTCAGCAATATCTGATATCATTTAAAGTTTATCAAAATCACATG
AAAAAACATCGAGAAGGAAAATATAATTGTGAAATATGTGACAAAAAATTTACTAACAAA
ATTCATTTAAATAATCACTTAGAAATGCATAGAAATATTATTGAATCATGA
>g14109.t1 Gene=g14109 Length=336
MDENLNSFLDKCRCCLEEITLAKIEIDNLIVRKYFEMTQLNLATSNLLPSFICVDCYEIL
ISYSDIRTKFIENHQKLEEKFVQNETYELIEEEEACIEYEEIEVKVEEQGYTTDLHEIIE
EIPVEEISYSEKNEKENEDSEEEEELKLEDIVKPEFLHYCLPKNEPENRKSKISQKSYSV
KENRNNKKNDFMCEECGKLFTNPVSVKQHITLVHRKIKFNCDVENCGRVFTTQLHLSKHK
AAFHNNSNTIPCHICNKRFHSKTELNSHMNSLHPDGNNEEYKCEICQQYLISFKVYQNHM
KKHREGKYNCEICDKKFTNKIHLNNHLEMHRNIIES
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g14109.t1 | Coils | Coil | Coil | 327 | 336 | - |
| 12 | g14109.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 163 | 248 | 3.7E-11 |
| 11 | g14109.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 251 | 277 | 1.0E-5 |
| 13 | g14109.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 278 | 334 | 8.4E-11 |
| 6 | g14109.t1 | PANTHER | PTHR24390:SF159 | GH23506P-RELATED | 124 | 328 | 2.3E-28 |
| 7 | g14109.t1 | PANTHER | PTHR24390 | ZINC FINGER PROTEIN | 124 | 328 | 2.3E-28 |
| 1 | g14109.t1 | Pfam | PF07776 | Zinc-finger associated domain (zf-AD) | 12 | 79 | 3.6E-8 |
| 3 | g14109.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 191 | 214 | 0.0096 |
| 5 | g14109.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 219 | 244 | 0.01 |
| 4 | g14109.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 251 | 273 | 7.4E-4 |
| 2 | g14109.t1 | Pfam | PF12874 | Zinc-finger of C2H2 type | 308 | 327 | 1.2E-4 |
| 18 | g14109.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 193 | 214 | - |
| 17 | g14109.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 221 | 244 | - |
| 15 | g14109.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 252 | 273 | - |
| 16 | g14109.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 310 | 330 | - |
| 25 | g14109.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 191 | 219 | 11.177 |
| 27 | g14109.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 219 | 249 | 11.219 |
| 26 | g14109.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 250 | 278 | 9.702 |
| 28 | g14109.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 308 | 330 | 10.99 |
| 19 | g14109.t1 | SMART | SM00868 | zf_AD_2 | 11 | 80 | 8.8E-5 |
| 20 | g14109.t1 | SMART | SM00355 | c2h2final6 | 191 | 214 | 0.0095 |
| 24 | g14109.t1 | SMART | SM00355 | c2h2final6 | 219 | 244 | 0.045 |
| 22 | g14109.t1 | SMART | SM00355 | c2h2final6 | 250 | 273 | 0.002 |
| 21 | g14109.t1 | SMART | SM00355 | c2h2final6 | 281 | 303 | 0.083 |
| 23 | g14109.t1 | SMART | SM00355 | c2h2final6 | 308 | 330 | 3.7E-4 |
| 8 | g14109.t1 | SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 11 | 79 | 8.41E-7 |
| 9 | g14109.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 191 | 240 | 5.34E-8 |
| 10 | g14109.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 281 | 330 | 3.62E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
