Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14114 g14114.t3 isoform g14114.t3 34785173 34786137
chr_1 g14114 g14114.t3 exon g14114.t3.exon1 34785173 34785363
chr_1 g14114 g14114.t3 cds g14114.t3.CDS1 34785173 34785363
chr_1 g14114 g14114.t3 exon g14114.t3.exon2 34785428 34785742
chr_1 g14114 g14114.t3 cds g14114.t3.CDS2 34785428 34785728
chr_1 g14114 g14114.t3 exon g14114.t3.exon3 34786129 34786137
chr_1 g14114 g14114.t3 TSS g14114.t3 34786310 34786310
chr_1 g14114 g14114.t3 TTS g14114.t3 NA NA

Sequences

>g14114.t3 Gene=g14114 Length=515
CAAAAGTAAAAGAAAAACAACCGATGACAAAAAAACTTACAAAATTTAAAATAAAATTTC
ATAACATGTCTTATCCACTTTCACCGAACAGTTATTGGTTGATTTTTGGCATCTTCATTC
CTTTCTATTTTCCTCTTCAACAAGGCGATGTTTATTTAAAAGTGATAGGAAAAATGGCAT
TATATAGCTTTATTTTATGGATAAGATTGTGTGTGATTTGCCGATTTTTATTGACACTTG
TGCTAAAACATAAAGGACTGATTTTAGAAACAAGAGGGCAAAATCCAACTTTTAAGACTA
AAATGTATAAATATTTTCTTGAAAAACTTAAAGTCTGGAACAAACCACTCTTCTTTAGTT
TTCAAAATGCTCTACCTCGTTTGTCTGTACCCGATTTAAAAGTCACAATTAAAAAGTATT
TAGACTCAATTCGAAGCTTTACTGATGATGAGAATTATGAAAGAATTAAAAAAGAAGCAG
AAACTTTCGAGAATGGACTTGGAAAGAAAATTCAA

>g14114.t3 Gene=g14114 Length=164
MTKKLTKFKIKFHNMSYPLSPNSYWLIFGIFIPFYFPLQQGDVYLKVIGKMALYSFILWI
RLCVICRFLLTLVLKHKGLILETRGQNPTFKTKMYKYFLEKLKVWNKPLFFSFQNALPRL
SVPDLKVTIKKYLDSIRSFTDDENYERIKKEAETFENGLGKKIQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g14114.t3 Gene3D G3DSA:1.10.275.20 - 100 164 9.5E-15
2 g14114.t3 PANTHER PTHR22589:SF31 CARNITINE PALMITOYLTRANSFERASE I 42 164 4.7E-20
3 g14114.t3 PANTHER PTHR22589 CARNITINE O-ACYLTRANSFERASE 42 164 4.7E-20
1 g14114.t3 Pfam PF00755 Choline/Carnitine o-acyltransferase 117 164 2.0E-10
8 g14114.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 20 -
12 g14114.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 21 39 -
10 g14114.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 40 50 -
11 g14114.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 51 74 -
9 g14114.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 75 164 -
6 g14114.t3 SUPERFAMILY SSF52777 CoA-dependent acyltransferases 109 164 1.61E-13
5 g14114.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 37 -
4 g14114.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 52 74 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016746 acyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values