General information for g14115.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Carnitine O-palmitoyltransferase 1, muscle isoform.
Parent gene
- The parent gene g14115 is located on chr_1: 34788223..34789540 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14115 | g14115.t11 | isoform | g14115.t11 | 34787265 | 34789065 |
| chr_1 | g14115 | g14115.t11 | exon | g14115.t11.exon1 | 34787265 | 34787397 |
| chr_1 | g14115 | g14115.t11 | cds | g14115.t11.CDS1 | 34787265 | 34787397 |
| chr_1 | g14115 | g14115.t11 | exon | g14115.t11.exon2 | 34787455 | 34787540 |
| chr_1 | g14115 | g14115.t11 | cds | g14115.t11.CDS2 | 34787455 | 34787540 |
| chr_1 | g14115 | g14115.t11 | exon | g14115.t11.exon3 | 34787601 | 34789065 |
| chr_1 | g14115 | g14115.t11 | cds | g14115.t11.CDS3 | 34787601 | 34788608 |
| chr_1 | g14115 | g14115.t11 | TSS | g14115.t11 | 34789544 | 34789544 |
| chr_1 | g14115 | g14115.t11 | TTS | g14115.t11 | NA | NA |
Sequences
>g14115.t11 Gene=g14115 Length=1684
ATGTCTGGTTTTCGTGCATCTTCTACTACTGAAATTAAAGATTATATCGATGCGCATCAC
AATGACGAAATTCTTCAGTTAGTTTGGTTGTCCGGTTTAAAGTCCTGGAAACATCGCTAC
GCAGTATTTAAGCGCAAAGTCCAGAATGGTGTTTACCCCGCTCATTTAGAGTCTCTTTTC
GTCATCATTGTCGTTGTTATGGCATTTCATTTTTCGTCTACAAAAGTTCCATATGACTTA
CTTAATACCTTCATTTCACTTTTACCGAGGTAATTTTAAGTAACGAAAAAAAATTTATAT
TTTTTATCAAAAATTCGATTATGCATGAAGGTCGCTAACATTTTCTTTTTCGTTTAGTAA
TTTGATCGACTGGCAGATACTGTTATGTGTTATCATTGGATTTTTATGGTGGTTGTCGAT
ATGTTTGACATTACGTTATACATTAAAATTATTGCTAATGTACAAGGGATATTTATTTGA
AACTCGAGGAAAAGGAGTTAGTTTAAAGACAAAAGTGTGGGCAATTTTAGTTAAACTTTT
GCTCAAATGGAATTCCCCGGTATTGTACAGTTTTCAAGGATCTCTACCTCGTTTGTCTGT
TCCTGATGTTAACGATACAATTAAACGCTACCTCGCTTCAGTTCGTCCAATTTATGACGA
TGAAACTTATGATAAAGTGTGTAAAGATGCTGAATTTTTTGAAAACGGAATTGCAAAGAA
GTTGCAACGGTATTTGGTGTTGAAGAGTTGGTGGGCAGATAACTATGTATCAGATTGGTG
GGAAGAGTATGCTTATCTAAAAAGCCGTGAACCGTTGATGTATGGTAGTAATTATTACGG
TAGTGATACTATTTATCCACCAACAAATAGTCAAGCTGCACGAGCTGCTAATCTCGCTTA
TCTCATGCTTAAATTTCGAGATAAAATTGTTCATCAAGAATTGCCACCAATTATGCTACA
ATCAATGGTTCCTCTTTGCTCATCTCAATATGAAAGACTTTTCAATACAGCTCGAATTCC
AGGAATTGAAAGTGATAAAATTATTCACGTTGAAGATTCAAAGCACATTGTGGTGATGCA
TAAAGGATCTTATTATAAACTTGATGTTTATTATCGTGAACATATGCTCAATGCAGCTGA
TTTGCAATACCAAATTGAAGAAATTTTACAACTCAAACCAACAACATCATCAACTGAGAA
ACATTTACCATCATTGACTGCTTGGAATCGTACTAAATGGGCAGAAGTTCGAGATAAATT
TTTCTCAACTGGAATCAATAAAGAATCTTTAGAAGCAATTGAAAGTGCAGCATTTATAAT
TGCATTAGATGATGAGCCTTATATTTTTGACCTTAAATCATCACCAGAAGAGTATGGTCA
TTATGGAAAGCAATTGCTAGTTGGAAATGGTCACAATCGTTGGTTTGACAAGAGTTTCAA
TTTATGTGTTGGAAGTAATGGAAAGGCTGGAATTCATGGTGAACATACATGGGCAGATGC
TTCAATTGTTTCTCATTTATTGGAAGATACAGTTTGTGATGATTATTCGTGTTATGATTC
TAATGGAAGATTACTTGTTGCACCATCAATTAAAGTAAAAACGTTTAAAAAACTTCAATG
GGATTTAAAAGATACTTTATTACAACACTCTGTAGAAGCAGCTTATGAAGATGCGATCAA
AATT
>g14115.t11 Gene=g14115 Length=409
MYKGYLFETRGKGVSLKTKVWAILVKLLLKWNSPVLYSFQGSLPRLSVPDVNDTIKRYLA
SVRPIYDDETYDKVCKDAEFFENGIAKKLQRYLVLKSWWADNYVSDWWEEYAYLKSREPL
MYGSNYYGSDTIYPPTNSQAARAANLAYLMLKFRDKIVHQELPPIMLQSMVPLCSSQYER
LFNTARIPGIESDKIIHVEDSKHIVVMHKGSYYKLDVYYREHMLNAADLQYQIEEILQLK
PTTSSTEKHLPSLTAWNRTKWAEVRDKFFSTGINKESLEAIESAAFIIALDDEPYIFDLK
SSPEEYGHYGKQLLVGNGHNRWFDKSFNLCVGSNGKAGIHGEHTWADASIVSHLLEDTVC
DDYSCYDSNGRLLVAPSIKVKTFKKLQWDLKDTLLQHSVEAAYEDAIKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14115.t11 | Gene3D | G3DSA:1.10.275.20 | - | 26 | 129 | 0 |
| 5 | g14115.t11 | Gene3D | G3DSA:3.30.559.70 | - | 130 | 408 | 0 |
| 2 | g14115.t11 | PANTHER | PTHR22589:SF31 | CARNITINE PALMITOYLTRANSFERASE I | 1 | 406 | 0 |
| 3 | g14115.t11 | PANTHER | PTHR22589 | CARNITINE O-ACYLTRANSFERASE | 1 | 406 | 0 |
| 1 | g14115.t11 | Pfam | PF00755 | Choline/Carnitine o-acyltransferase | 43 | 402 | 0 |
| 4 | g14115.t11 | SUPERFAMILY | SSF52777 | CoA-dependent acyltransferases | 35 | 400 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
