General information for g14117.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable ADP-dependent glucokinase.
Parent gene
- The parent gene g14117 is located on chr_1: 34793527..34795090 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14117 | g14117.t3 | isoform | g14117.t3 | 34793527 | 34795090 |
| chr_1 | g14117 | g14117.t3 | exon | g14117.t3.exon1 | 34793527 | 34794611 |
| chr_1 | g14117 | g14117.t3 | cds | g14117.t3.CDS1 | 34793527 | 34794543 |
| chr_1 | g14117 | g14117.t3 | exon | g14117.t3.exon2 | 34794669 | 34795090 |
| chr_1 | g14117 | g14117.t3 | TSS | g14117.t3 | NA | NA |
| chr_1 | g14117 | g14117.t3 | TTS | g14117.t3 | NA | NA |
Sequences
>g14117.t3 Gene=g14117 Length=1507
ATGATTCCCTTCTTCAAATATTTCACTATATCGTCCTTCATTGCTCTATTTGCAATAATT
TTTCAAGCCTATTTTGAGAGCGGTCAATTGCAAGAAGTGACTGAAGTTCTATCAAGTTTA
ATGAAATTAGAAAACGTTAATCGTAAATCGATACCAAAAGTTATAATCGGTTATGGAAGT
TGCAGTGACTTGACTGTTCGTGCTGTTGACTTTTTAAATTATTCTGAAAATTTTAAAGAA
AGTTTTTCACAACGAGATCAGAATGACGACGAAATCAATACATTTGATGATTTTATGAAA
AGTTTCCTTTACTATTTCTCAAAAGGAGCAGCAGCTGAAAGATATACACCAAATAAAGAA
ATGTTTTTGAATTTGGTGAACATTGCTAAAAAACATGAATCGCATCGATGGGAATTAGGT
AAGTGGAAATGCAGCAGTAATGGGAACTAGATTTTTAATTGAAAAGACTGAAGTTTTGCT
TGCAGCTACAATGTCTGATAAACAAAAGACTCATTTGATTAATGGAATAGATTTAGTAGA
TTTTAAACCAACAAAAGATTTTGTGGATGACATTCATTTAATTTTAGAATATAAAACTGG
AGAGCGATTTGGAGAACATGTAGCACCTCGAGCTAATCGCTATATCATACATTCAGATGC
AAATAATCCTTTGATAATATCATTAGAATTACTCAAACCTAATGCTCTAAAAGGAGATCT
TTTTGTTGTTTCAGGACTGCAAATGATGGATAATTATCCTTTTTCTTCACCAACTCTTAG
AAGCGAAAGACTTGAAGCTGTTAAAAATCAAATAATCAGTCTTGATAAGAAGACACTGAC
TCATTTTGAAATGGCATCTTTTGTTGAAATTGAGCTATTGAATGATTTGACTAAATATAT
TTTACCATATTCAGACTCAATTGGATTGAATGAACAAGAAATTGACAATTTATTGCATGT
TCTAGAATCTGGAAAAATTAGTTTAGTTGCAAATTCTAATCCGAGAGTTGCAACAACATT
AGATCAAATGCGTAAAGTTTTTAAAATTCTTAATCGAAATTATTTTGCTAATAGAGACAC
TGATAAAAATGTTCGCATGTTGAGTAGAATTCACATTCATACATTAGCATTCCAATTAAT
TTTAAATGTCAAAGATAGTAAATGGAAAAATATCAAAACTGCAGCAGCAAAATCTTCTCT
TATAGCACACCGTCATGTTTGTCAAACAAGTTATGTTAATCCAGATAATGCAATTTTAGT
ATTAGACGATAGTTTTTCAACTTCAATTGAGGAAAATGCCAAAACTGACGATGTGAGACC
AAAACGTATCGATGTTAAAAAATCTGGCTCTGCAATTTCATGTTGGATTGAAAAATTAAA
AGTTGATGAAAAGAATTTGGTTGAAGTGAAAATTTGCGTTGCACCAGTTTTAGTCTGTCG
TGAGGCAAAAAAGACAGTTGGTGCTGGCGATAATATTTCAGCTTCAGGTCTAGCAATGCA
AATCTAA
>g14117.t3 Gene=g14117 Length=338
MSDKQKTHLINGIDLVDFKPTKDFVDDIHLILEYKTGERFGEHVAPRANRYIIHSDANNP
LIISLELLKPNALKGDLFVVSGLQMMDNYPFSSPTLRSERLEAVKNQIISLDKKTLTHFE
MASFVEIELLNDLTKYILPYSDSIGLNEQEIDNLLHVLESGKISLVANSNPRVATTLDQM
RKVFKILNRNYFANRDTDKNVRMLSRIHIHTLAFQLILNVKDSKWKNIKTAAAKSSLIAH
RHVCQTSYVNPDNAILVLDDSFSTSIEENAKTDDVRPKRIDVKKSGSAISCWIEKLKVDE
KNLVEVKICVAPVLVCREAKKTVGAGDNISASGLAMQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14117.t3 | Gene3D | G3DSA:3.40.1190.20 | - | 35 | 338 | 0.000 |
| 2 | g14117.t3 | PANTHER | PTHR21208:SF1 | ADP-DEPENDENT GLUCOKINASE 2 | 25 | 338 | 0.000 |
| 3 | g14117.t3 | PANTHER | PTHR21208 | ADP-DEPENDENT GLUCOKINASE | 25 | 338 | 0.000 |
| 1 | g14117.t3 | Pfam | PF04587 | ADP-specific Phosphofructokinase/Glucokinase conserved region | 1 | 335 | 0.000 |
| 6 | g14117.t3 | ProSiteProfiles | PS51255 | ADP-dependent kinase (ADPK) domain profile. | 1 | 338 | 51.341 |
| 4 | g14117.t3 | SUPERFAMILY | SSF53613 | Ribokinase-like | 22 | 337 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
