General information for g14122.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as U3 small nucleolar ribonucleoprotein protein MPP10.
Parent gene
- The parent gene g14122 is located on chr_1: 34815476..34817274 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14122 | g14122.t1 | TSS | g14122.t1 | 34813664 | 34813664 |
| chr_1 | g14122 | g14122.t1 | isoform | g14122.t1 | 34813730 | 34815476 |
| chr_1 | g14122 | g14122.t1 | exon | g14122.t1.exon1 | 34813730 | 34813797 |
| chr_1 | g14122 | g14122.t1 | cds | g14122.t1.CDS1 | 34813730 | 34813797 |
| chr_1 | g14122 | g14122.t1 | exon | g14122.t1.exon2 | 34813862 | 34815476 |
| chr_1 | g14122 | g14122.t1 | cds | g14122.t1.CDS2 | 34813862 | 34815476 |
| chr_1 | g14122 | g14122.t1 | TTS | g14122.t1 | 34815530 | 34815530 |
Sequences
>g14122.t1 Gene=g14122 Length=1683
ATGGAAGAAATTTCAACAGCATTTGATTGCTTCAAGTCGATAACAAAACATCCAGAAACA
TTTTTAACACAACAAAATGAAAAGAGAGAAAGAATACAAAAAGAGATGATTGAAATCATC
TATAAATGCTCAAAGAAACTCGCGAGCGATAAAAAGAGCAAAGCTTTGAAGAAAATCATT
ACTAATGGCATGGATTCAGAGTCAATATGGCAACAATTAGAATTGCAAAATGAAGAGAGC
TTTGAATCAAATTTACAAGATGTTTCTCAATTTCTTGCAATGGATAGTCAGAAATTTCAA
TTGAATCTTGATGAAGAGACACCAGAAAGTGATGATCAAAAAGATGAAAGTGAAGAAGAG
TTAAATCAAAATGAGAATGGTGAAGCAAGTGAGTCAGATTCTCAAAATAATGAAAATGGT
TTTCTAAATAACGAAGATGATGTTGATGATGACGAAGAAGAAGAGAGTGATGACATGCCT
GTACAAAAGAAGAAAGTAAAGAAATCAATTGTTGATGATAAATTTTTCAAACTTAGTGAA
ATGGAAGAATTTCTAATAGATCAAGATAGAAAAGAAATGGGACAATCAAAATCAGACGAT
GACATTGATTATTTTGCACCAGATAATGATGAAATTAATCTTCAAGAGTCATTAAAATAT
TCAGATTTCTTTGATCCAGTTCATGACGATCAAAATGAATCAGATGAACAGTCAGAATCA
GAAGAGGAGCAAGAGAACGAAGGTCCCAAATCTTCTTATGAAATTCGACAGGAACGTTTG
AAAAAGAAAATTCAAAAAATGGAAGAGAATATGCTTGAAGAAAAATCTTGGCAAATGAAA
GGAGAAGTTAAAGCCACAAGTCGACCACAAAATTCTCTCTTAGAAGAAATTTTAGAATTT
GATTCAACAACTCGTCCAGCGCCAATAATTACAGAAAAAGTGTCAGTTCAACTAGAAGAT
ATAATTAAACAACGAATAAAAGATAAAGCATTCGATGATGTAGAAAGAAAAATTAAACCA
TCAGATATTCAATATGAGTATAAAAAGCAGTTAGTTCTTAATCAAGAGAAGAGTAAACAG
TCATTATCACAGATTTATGAGAAAGAATATTTAAAAGAAATTGAAAAAAATAATCCAAAT
GCTGAAGATGTTGAAGAAGAAGAACCAAAAGAGCATAAAGAAATTCGTGCAGAATTAAAA
GATCTTTTTGAAAAACTCGACATGCTTTCTAATTTCCATTACACACCACGACCAGCTCAG
CCTGAGCTTAAAATTATCACAAATCTTCCTACAATCGCAATTGAAGAAGTTGCGCCTGTT
AATGTCGGCAATGCTACTATGCTTGCTCCTGAGGAAATTAAATCTAAACCAAGAGGCGGA
ACAATTATTGGTGTTAATGAAAGAACGAAAACAGATAAAAATAGAGATCGTCGTCATAAA
AAAGCATTTCAACGAGACAAATTTAGTAAACAAAGTCATAAAAATGAGGGTATAGTTAAT
AAAGTAATGAAGAGTAGAAATGTTGAAAAGATGAAAATTTCTAAAGAGGCCACTAAATCT
TTAGCATCATCATTCTTTAATAAATTACAAGATGAAATTGATGTTTCAAAAAATGGAAAA
ATGAAAGGTAATAAAAGAAAAGCTGAAAAACAAAGTCATGAAGCTAAAAAGTTAAAATTA
TAA
>g14122.t1 Gene=g14122 Length=560
MEEISTAFDCFKSITKHPETFLTQQNEKRERIQKEMIEIIYKCSKKLASDKKSKALKKII
TNGMDSESIWQQLELQNEESFESNLQDVSQFLAMDSQKFQLNLDEETPESDDQKDESEEE
LNQNENGEASESDSQNNENGFLNNEDDVDDDEEEESDDMPVQKKKVKKSIVDDKFFKLSE
MEEFLIDQDRKEMGQSKSDDDIDYFAPDNDEINLQESLKYSDFFDPVHDDQNESDEQSES
EEEQENEGPKSSYEIRQERLKKKIQKMEENMLEEKSWQMKGEVKATSRPQNSLLEEILEF
DSTTRPAPIITEKVSVQLEDIIKQRIKDKAFDDVERKIKPSDIQYEYKKQLVLNQEKSKQ
SLSQIYEKEYLKEIEKNNPNAEDVEEEEPKEHKEIRAELKDLFEKLDMLSNFHYTPRPAQ
PELKIITNLPTIAIEEVAPVNVGNATMLAPEEIKSKPRGGTIIGVNERTKTDKNRDRRHK
KAFQRDKFSKQSHKNEGIVNKVMKSRNVEKMKISKEATKSLASSFFNKLQDEIDVSKNGK
MKGNKRKAEKQSHEAKKLKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g14122.t1 | Coils | Coil | Coil | 250 | 270 | - |
| 10 | g14122.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 167 | - |
| 11 | g14122.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 126 | - |
| 6 | g14122.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 142 | - |
| 8 | g14122.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 157 | - |
| 9 | g14122.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 203 | - |
| 12 | g14122.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 259 | - |
| 14 | g14122.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 259 | - |
| 7 | g14122.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 503 | - |
| 13 | g14122.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 503 | - |
| 5 | g14122.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 560 | - |
| 3 | g14122.t1 | PANTHER | PTHR17039 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 | 10 | 552 | 2.4E-128 |
| 4 | g14122.t1 | PANTHER | PTHR17039:SF0 | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 | 10 | 552 | 2.4E-128 |
| 16 | g14122.t1 | PIRSF | PIRSF017300 | snoRNP_Mpp10 | 1 | 249 | 3.1E-19 |
| 17 | g14122.t1 | PIRSF | PIRSF017300 | snoRNP_Mpp10 | 228 | 560 | 3.9E-108 |
| 2 | g14122.t1 | Pfam | PF04006 | Mpp10 protein | 14 | 246 | 1.0E-34 |
| 1 | g14122.t1 | Pfam | PF04006 | Mpp10 protein | 230 | 532 | 1.2E-117 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
| GO:0034457 | Mpp10 complex | CC |
| GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | CC |
| GO:0006364 | rRNA processing | BP |
KEGG
Orthology
- This transcript has been annotated with K14559 (U3 small nucleolar RNA-associated protein MPP10)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
