Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative U3 small nucleolar ribonucleoprotein protein MPP10.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14122 g14122.t2 TSS g14122.t2 34813664 34813664
chr_1 g14122 g14122.t2 isoform g14122.t2 34813862 34814826
chr_1 g14122 g14122.t2 exon g14122.t2.exon1 34813862 34814826
chr_1 g14122 g14122.t2 cds g14122.t2.CDS1 34813899 34814825
chr_1 g14122 g14122.t2 TTS g14122.t2 34815530 34815530

Sequences

>g14122.t2 Gene=g14122 Length=965
ACAACAAAATGAAAAGAGAGAAAGAATACAAAAAGAGATGATTGAAATCATCTATAAATG
CTCAAAGAAACTCGCGAGCGATAAAAAGAGCAAAGCTTTGAAGAAAATCATTACTAATGG
CATGGATTCAGAGTCAATATGGCAACAATTAGAATTGCAAAATGAAGAGAGCTTTGAATC
AAATTTACAAGATGTTTCTCAATTTCTTGCAATGGATAGTCAGAAATTTCAATTGAATCT
TGATGAAGAGACACCAGAAAGTGATGATCAAAAAGATGAAAGTGAAGAAGAGTTAAATCA
AAATGAGAATGGTGAAGCAAGTGAGTCAGATTCTCAAAATAATGAAAATGGTTTTCTAAA
TAACGAAGATGATGTTGATGATGACGAAGAAGAAGAGAGTGATGACATGCCTGTACAAAA
GAAGAAAGTAAAGAAATCAATTGTTGATGATAAATTTTTCAAACTTAGTGAAATGGAAGA
ATTTCTAATAGATCAAGATAGAAAAGAAATGGGACAATCAAAATCAGACGATGACATTGA
TTATTTTGCACCAGATAATGATGAAATTAATCTTCAAGAGTCATTAAAATATTCAGATTT
CTTTGATCCAGTTCATGACGATCAAAATGAATCAGATGAACAGTCAGAATCAGAAGAGGA
GCAAGAGAACGAAGGTCCCAAATCTTCTTATGAAATTCGACAGGAACGTTTGAAAAAGAA
AATTCAAAAAATGGAAGAGAATATGCTTGAAGAAAAATCTTGGCAAATGAAAGGAGAAGT
TAAAGCCACAAGTCGACCACAAAATTCTCTCTTAGAAGAAATTTTAGAATTTGATTCAAC
AACTCGTCCAGCGCCAATAATTACAGAAAAAGTGTCAGTTCAACTAGAAGATATAATTAA
ACAACGAATAAAAGATAAAGCATTCGATGATGTAGAAAGAAAAATTAAACCATCAGATAT
TCAAT

>g14122.t2 Gene=g14122 Length=309
MIEIIYKCSKKLASDKKSKALKKIITNGMDSESIWQQLELQNEESFESNLQDVSQFLAMD
SQKFQLNLDEETPESDDQKDESEEELNQNENGEASESDSQNNENGFLNNEDDVDDDEEEE
SDDMPVQKKKVKKSIVDDKFFKLSEMEEFLIDQDRKEMGQSKSDDDIDYFAPDNDEINLQ
ESLKYSDFFDPVHDDQNESDEQSESEEEQENEGPKSSYEIRQERLKKKIQKMEENMLEEK
SWQMKGEVKATSRPQNSLLEEILEFDSTTRPAPIITEKVSVQLEDIIKQRIKDKAFDDVE
RKIKPSDIQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g14122.t2 Coils Coil Coil 215 235 -
11 g14122.t2 Coils Coil Coil 308 309 -
10 g14122.t2 MobiDBLite mobidb-lite consensus disorder prediction 62 132 -
4 g14122.t2 MobiDBLite mobidb-lite consensus disorder prediction 73 91 -
8 g14122.t2 MobiDBLite mobidb-lite consensus disorder prediction 92 107 -
7 g14122.t2 MobiDBLite mobidb-lite consensus disorder prediction 108 122 -
5 g14122.t2 MobiDBLite mobidb-lite consensus disorder prediction 151 168 -
6 g14122.t2 MobiDBLite mobidb-lite consensus disorder prediction 151 223 -
9 g14122.t2 MobiDBLite mobidb-lite consensus disorder prediction 209 223 -
3 g14122.t2 PANTHER PTHR17039 U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 3 305 7.6E-68
1 g14122.t2 Pfam PF04006 Mpp10 protein 5 211 1.5E-30
2 g14122.t2 Pfam PF04006 Mpp10 protein 195 306 1.4E-48

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:0034457 Mpp10 complex CC
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex CC
GO:0006364 rRNA processing BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values