Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase theta-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14124 g14124.t1 TTS g14124.t1 34817390 34817390
chr_1 g14124 g14124.t1 isoform g14124.t1 34817449 34818188
chr_1 g14124 g14124.t1 exon g14124.t1.exon1 34817449 34817917
chr_1 g14124 g14124.t1 cds g14124.t1.CDS1 34817449 34817917
chr_1 g14124 g14124.t1 exon g14124.t1.exon2 34817977 34818188
chr_1 g14124 g14124.t1 cds g14124.t1.CDS2 34817977 34818188
chr_1 g14124 g14124.t1 TSS g14124.t1 34818898 34818898

Sequences

>g14124.t1 Gene=g14124 Length=681
ATGTTGAAATTTTATTTCGACCTCATGTCACAACCTTCACGTGCATTATACATTTTTCTT
AAAGTCACTAAAATACCGGTTGAGTTTGTTAAAATTGATTTAAAGAAAGCTGAACACTTG
ACTGATGAATTTAAAGCAGTGAATAGATTTCAAAAAGTTCCTTGTATTGTTGATGGTGAT
TTTCAATTATCTGAGTCGGTGGCAATATTTAGATATTTGATTGAAACAAGAAATGGAGTT
GCTGAAAATTGGTACCCAAAAGAATTAAAGACGAGAGCACTTGTTGATGAGTTTCTTGAG
TATCAACACAATGCAGTTCGTCTTCCTTGTGCTATGTATTTTCAAACTAAATTTTTAATT
CCAATATTTTCCGGCAAGCCTGTAAATGAAGAGCGAGTGAGATCGTTTAAAAAACAGATG
GAAAATTCACTTGATGCACTTGAAAATATTTGGCTTCAAAGCACGGAGAAAGAATTTTTA
GCGACAAAAGAAATTTCTTTTGCTGATGTTTTAGCTGCTTGTGAACTTGAGCAACCGAAA
ATGGCTGGTTATAATACGTTTGAAGGCAGACCAAAATTAACGAAATGGTATGAGCGAGTT
AAAGAAGTAACCAATCCCTACTATGATGAAGCTCATGTGATTGTTAACAAAGTTATACAA
AAGAATAAATCAAAATTGTAA

>g14124.t1 Gene=g14124 Length=226
MLKFYFDLMSQPSRALYIFLKVTKIPVEFVKIDLKKAEHLTDEFKAVNRFQKVPCIVDGD
FQLSESVAIFRYLIETRNGVAENWYPKELKTRALVDEFLEYQHNAVRLPCAMYFQTKFLI
PIFSGKPVNEERVRSFKKQMENSLDALENIWLQSTEKEFLATKEISFADVLAACELEQPK
MAGYNTFEGRPKLTKWYERVKEVTNPYYDEAHVIVNKVIQKNKSKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g14124.t1 CDD cd03050 GST_N_Theta 2 73 6.91232E-39
10 g14124.t1 CDD cd03183 GST_C_Theta 92 218 2.55131E-58
8 g14124.t1 Coils Coil Coil 216 226 -
7 g14124.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 78 1.6E-21
6 g14124.t1 Gene3D G3DSA:1.20.1050.10 - 81 226 4.9E-50
3 g14124.t1 PANTHER PTHR43917 - 2 224 3.4E-71
2 g14124.t1 Pfam PF02798 Glutathione S-transferase, N-terminal domain 14 73 2.9E-12
1 g14124.t1 Pfam PF00043 Glutathione S-transferase, C-terminal domain 122 200 1.9E-8
12 g14124.t1 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 81 18.243
11 g14124.t1 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 88 226 15.161
13 g14124.t1 SFLD SFLDG00358 Main (cytGST) 2 221 0.0
14 g14124.t1 SFLD SFLDG01153 Main.4: Theta-like 2 221 0.0
4 g14124.t1 SUPERFAMILY SSF52833 Thioredoxin-like 1 86 4.94E-20
5 g14124.t1 SUPERFAMILY SSF47616 GST C-terminal domain-like 83 203 8.32E-27

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values