Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14125 g14125.t1 isoform g14125.t1 34818773 34820038
chr_1 g14125 g14125.t1 exon g14125.t1.exon1 34818773 34820038
chr_1 g14125 g14125.t1 cds g14125.t1.CDS1 34818773 34820038
chr_1 g14125 g14125.t1 TSS g14125.t1 NA NA
chr_1 g14125 g14125.t1 TTS g14125.t1 NA NA

Sequences

>g14125.t1 Gene=g14125 Length=1266
ATGGTCAGGAAGAGAAAGATTTCACCGAGAAATTCGCCGAATAAGTCGAGAAAAAATAAT
GCGGGCAAAAAAATGAAAACAATACCGCAAATTAAGAATGATCAATCAAATCAACGAAAT
GGGTCCAGTCCTGGTCCATCAAAAAGAGGTATTACAACTATTTCTAGTGCTGGATCTAGT
TCATCAATATGTTCAATGGAAAGTTTCAATTCTAAGAAAAATGAAGCAACAAGCAAAAAG
GTTAAACCTATTTTTGTCGATTGTCCATTAGTACCAGTAAGAAATGTCATCAACAACGTT
AATCTGAAGTCTAAACCAATGTTGAAGTTATCAAATGGTAAGACACAAATACAATGCAAT
AATTTGGATGACAAACAAAAAGTAATTGAAAAATTAAAAAGCCAATCAATCAGATTTTAT
ACGTTCACCGAAAATATCAACAAACCTCAAATTGTTCTTCTCAAAGGTTACTATTGGGAA
AACAATGTTCAAGAGAATATTCAATTAGACAATTTGAAGAAAAATCTAACTGACCAAGGT
TTGGTCATCAACTTAATTAAAGTCTTCTACAAAAATGATGACTATGTGATTTTCTCAGTA
TCATTCAAGGAAAAAATTAACTTGATAGATCTCAATTTCAATTACAAAATAATTGATTCA
ATCATAGTCAGATGGGAGCCTTTGAAAAGCTCAAATAAAAAGCCGATGCAGTGTTTTAAT
TGTCAAAGATTTGGTCACTCAGCAATGAATTGTGGATATCAAAACAAATGTGTGAAATGC
ACTGAAGATCATAAACCAGGTGAATGTGCAAGAATTAAGAATGAAGAAGGCAAACCAAAG
TGTGTAAACTGTGGTGGTGACCATCCTGCAAATTTCTCAAAATGTCCTGAAAATATTAAG
TATCAAGAAAAAATCAACGAATTAAAGAAGAAATCTGACAAGAGAAAGATAAGAAATCCG
GCACAGACTAGATTGCATAAAATCCAGCATAGTTACAATGATAAAGATTTTCCAGAATTG
CCCTCTCCTTCTACCACTAACAAACATTTAGGACATCAGGTGAGTCTTGATCATCATATG
AATAGAAATGATGCTCTGATTAACAAATTTAATGATGCTTGCAAAAGATTCAAGGAAATC
CCTAATATTCAAAGATCCATTGAAATCTTTGTTAATTTTGTTGAAAATCTTGAAGCTGCT
TCTACAGAAGCAGAAAGACAGTTAATTCTAAGAAATCATATTTTCGCGAACAATTATGAC
ACTTAA

>g14125.t1 Gene=g14125 Length=421
MVRKRKISPRNSPNKSRKNNAGKKMKTIPQIKNDQSNQRNGSSPGPSKRGITTISSAGSS
SSICSMESFNSKKNEATSKKVKPIFVDCPLVPVRNVINNVNLKSKPMLKLSNGKTQIQCN
NLDDKQKVIEKLKSQSIRFYTFTENINKPQIVLLKGYYWENNVQENIQLDNLKKNLTDQG
LVINLIKVFYKNDDYVIFSVSFKEKINLIDLNFNYKIIDSIIVRWEPLKSSNKKPMQCFN
CQRFGHSAMNCGYQNKCVKCTEDHKPGECARIKNEEGKPKCVNCGGDHPANFSKCPENIK
YQEKINELKKKSDKRKIRNPAQTRLHKIQHSYNDKDFPELPSPSTTNKHLGHQVSLDHHM
NRNDALINKFNDACKRFKEIPNIQRSIEIFVNFVENLEAASTEAERQLILRNHIFANNYD
T

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g14125.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 56 -
3 g14125.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 22 -
1 g14125.t1 MobiDBLite mobidb-lite consensus disorder prediction 29 56 -
4 g14125.t1 ProSiteProfiles PS50158 Zinc finger CCHC-type profile. 238 251 8.532

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008270 zinc ion binding MF
GO:0003676 nucleic acid binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values