General information for g14128.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase theta-1.
Parent gene
- The parent gene g14128 is located on chr_1: 34832926..34834071 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14128 | g14128.t2 | isoform | g14128.t2 | 34831726 | 34832684 |
| chr_1 | g14128 | g14128.t2 | exon | g14128.t2.exon1 | 34831726 | 34832684 |
| chr_1 | g14128 | g14128.t2 | cds | g14128.t2.CDS1 | 34832128 | 34832655 |
| chr_1 | g14128 | g14128.t2 | TSS | g14128.t2 | 34832980 | 34832980 |
| chr_1 | g14128 | g14128.t2 | TTS | g14128.t2 | NA | NA |
Sequences
>g14128.t2 Gene=g14128 Length=959
ATTGATAATTTTTTTTATTTAGATATTTGATGCAATCAAATCCAAATATTTCTGAAAATT
GGTATCCTAAAGATGCAAAATCACGAGCACTTGTTGATGAGTTTCTTGAGTATCAACATA
TTGGTGTCAGATATCCTTGCGCAATTTATTTTCAAACCAAATGGCTTTTACCAACTTTCT
CAGGCAAACCTCCAAATGAGAAAAAAGTGAGAGAATATGAAAACTTGATGATAAAGTCAC
TAGATACATTTGAGAATATTTGGCTTGCAAGTGATCAAAAAGAATTTTTAGCCACAAAAG
AAATTTCCTTTGCTGATATTTTGGCATGCTGCGAACTTGAGCAACCACGAATGGCAGACT
TTGATACATTTAAAGACCGACCGAGATTGAAAAAGTGGCATGAAAAAGTTAAGAAAGAAA
CGAATCCATATTACGATGAAGCACATAAAAATGTTTATGACATAATTCAGTCAAAAGGAA
AACTTTCAAGTAAATTTGATTTGGTTTTCATTTATCGCTACTTGAGATATATAAAATTCA
AAAAATTCTTTGAATAATTTAATGCAAATAAATTTGTTAGCAAAATGTGAGTAGTTAAAT
TTTTTTTATGTAAAAAGTGTTTGAATTCAATCAATTATAATTCGATACAGCTATGACTGT
TTAAGTAAAGAAATTGATACATTAATCTAATCTTTAATTAAACACAAAAGCTGTGATAAC
TTGAAAAAAAAACAACTTAACAAAAAAAGAAGATTTTTTCCATTTTAATATTACCGTCTT
CCCTCGAAAATAACGACCGGTCGTTATTCTATCGTTATACTTCGGCGCCAAAAGCGCACT
GTCTATTATGTTCTTTAGAAAAATGCATTAAAACAACATATTTTTTACACTTTTTTGTAT
TTTTATTACTTTTTACTAAAGTTCTGACAGGAATAAATCACTCGATCAATATGACATAA
>g14128.t2 Gene=g14128 Length=175
MQSNPNISENWYPKDAKSRALVDEFLEYQHIGVRYPCAIYFQTKWLLPTFSGKPPNEKKV
REYENLMIKSLDTFENIWLASDQKEFLATKEISFADILACCELEQPRMADFDTFKDRPRL
KKWHEKVKKETNPYYDEAHKNVYDIIQSKGKLSSKFDLVFIYRYLRYIKFKKFFE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14128.t2 | CDD | cd03183 | GST_C_Theta | 19 | 145 | 0.000e+00 |
| 4 | g14128.t2 | Gene3D | G3DSA:1.20.1050.10 | - | 8 | 161 | 0.000e+00 |
| 2 | g14128.t2 | PANTHER | PTHR43917 | - | 9 | 153 | 0.000e+00 |
| 1 | g14128.t2 | Pfam | PF00043 | Glutathione S-transferase, C-terminal domain | 54 | 127 | 4.000e-07 |
| 5 | g14128.t2 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 15 | 152 | 1.545e+01 |
| 3 | g14128.t2 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 10 | 140 | 0.000e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
