General information for g14128.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14128 is located on chr_1: 34832926..34834071 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14128 | g14128.t3 | TTS | g14128.t3 | 34832096 | 34832096 |
| chr_1 | g14128 | g14128.t3 | isoform | g14128.t3 | 34832128 | 34832926 |
| chr_1 | g14128 | g14128.t3 | exon | g14128.t3.exon1 | 34832128 | 34832441 |
| chr_1 | g14128 | g14128.t3 | cds | g14128.t3.CDS1 | 34832128 | 34832441 |
| chr_1 | g14128 | g14128.t3 | exon | g14128.t3.exon2 | 34832496 | 34832926 |
| chr_1 | g14128 | g14128.t3 | cds | g14128.t3.CDS2 | 34832496 | 34832655 |
| chr_1 | g14128 | g14128.t3 | TSS | g14128.t3 | 34832980 | 34832980 |
Sequences
>g14128.t3 Gene=g14128 Length=745
ATGAAATTTTATTTCGACTTACTTTCACAACCTTCACGTGCATTATACATTTTTCTTAAA
GTCACTAAAACACCAGTTGAGTTTGTTAAAATTGATTTAAAGCGATTAGAGCATTTAACG
AATGAATTTAAAGCAGTGAATAGATTTCAAAAAGTTCCTTGCATTGTTGATAATGGATTC
AAATTATCTGAGTCGGTGGCAATATTTAGGTGAAATTCAACAAACAATTTTCTTTTTTAT
ACATTGATAATTTTTTTTATTTAGATATTTGATGCAATCAAATCCAAATATTTCTGAAAA
TTGGTATCCTAAAGATGCAAAATCACGAGCACTTGTTGATGAGTTTCTTGAGTATCAACA
TATTGGTGTCAGATATCCTTGCGCAATTTATTTTCAAACCAAATGGCTTTTACCAACTTT
CTCAGGCAAACATACATTTGAGAATATTTGGCTTGCAAGTGATCAAAAAGAATTTTTAGC
CACAAAAGAAATTTCCTTTGCTGATATTTTGGCATGCTGCGAACTTGAGCAACCACGAAT
GGCAGACTTTGATACATTTAAAGACCGACCGAGATTGAAAAAGTGGCATGAAAAAGTTAA
GAAAGAAACGAATCCATATTACGATGAAGCACATAAAAATGTTTATGACATAATTCAGTC
AAAAGGAAAACTTTCAAGTAAATTTGATTTGGTTTTCATTTATCGCTACTTGAGATATAT
AAAATTCAAAAAATTCTTTGAATAA
>g14128.t3 Gene=g14128 Length=157
MQSNPNISENWYPKDAKSRALVDEFLEYQHIGVRYPCAIYFQTKWLLPTFSGKHTFENIW
LASDQKEFLATKEISFADILACCELEQPRMADFDTFKDRPRLKKWHEKVKKETNPYYDEA
HKNVYDIIQSKGKLSSKFDLVFIYRYLRYIKFKKFFE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14128.t3 | CDD | cd03183 | GST_C_Theta | 19 | 127 | 0.0000000 |
| 4 | g14128.t3 | Gene3D | G3DSA:1.20.1050.10 | - | 8 | 143 | 0.0000000 |
| 2 | g14128.t3 | PANTHER | PTHR43917 | - | 9 | 135 | 0.0000000 |
| 1 | g14128.t3 | Pfam | PF00043 | Glutathione S-transferase, C-terminal domain | 62 | 109 | 0.0000067 |
| 5 | g14128.t3 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 1 | 134 | 9.9080000 |
| 3 | g14128.t3 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 10 | 122 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
