General information for g14131.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Tyrosine aminotransferase.
Parent gene
- The parent gene g14131 is located on chr_1: 34838871..34839437 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14131 | g14131.t3 | isoform | g14131.t3 | 34837655 | 34838797 |
| chr_1 | g14131 | g14131.t3 | exon | g14131.t3.exon1 | 34837655 | 34838797 |
| chr_1 | g14131 | g14131.t3 | cds | g14131.t3.CDS1 | 34838080 | 34838796 |
| chr_1 | g14131 | g14131.t3 | TTS | g14131.t3 | 34839477 | 34839477 |
| chr_1 | g14131 | g14131.t3 | TSS | g14131.t3 | NA | NA |
Sequences
>g14131.t3 Gene=g14131 Length=1143
TGTCATATGAAATATTGTTTATTAAAAACACAAATAATAAACATAAAAATTATAAGCTTA
TACCTGCAGATTTTATTATACTCGAAAGTCATTTTGAATATTTTTTAAAATTTAAGACGG
TTCACGATTGTTTTCGGTAACAAATGAAGTTACAAACACTTCGTTAATTTCCTTTATTCA
TTAATTTTTAAAATCTTTCTTATAAGAGAGAGAGAGAAAAAATAATCCGTAAAAGAAGAA
GAAGAAGAAATTTAAAGCGCTCTTTTGCGATTGCATTTTGTTAGTGATTGCATGATTGAA
AAAAATTCGTTATGAATTTTGGAAAAAAAATTGTTCCCTCATTCCTTATCAAATAATATT
ATATAAAAATTGCTTCTCTCTATCAGTTTAAATTAAATAATTGAATGATTAAACAAACTT
TTTAAATGGCTGCATCAAAAATTATTAAAAAATGGAATATTTTACCTACTGAATTTTCTA
AAAATTCCATTAATCCATTAAGACTTTTATGGGAGACTCAACAGCCGAAAGGAAATCCTA
AATTGAAAGAAATTCATTTGCAGCCAGGTGATCCAACTCTTTATGGAAATTTTCCACCTC
ACCCGATTATTGCAAAAGCAATTTCAGACGCAGCTCTTAATGATAAATTTTCATATGTGG
AATGTCTTGGAAGCCGAATAGCAAGACAAGCAGTTGCTGACTACAGTCAACATATGGGAA
AGATCACAGCTGACGATATAATTTTAACAACTGGTTGTTCTATGGCTGTTGAAGTTGCAA
TTCGTTCATTAGCAAATCCTGATGAAAATGTTTTAGTTCCGCGTCCTTCATGGAATTATT
CGACCTGGATCCACGGTTCGGGAATTTTAGCGAAATATTACAATTTAAATCCAGAAAAAG
AATGGGAAATTGATTTGGAAGATTTGCAAAATAAAATCGATAAAAAAACTAAAGCTATAA
TAGTTAATAGCCCGGGCAACCCTTGTGGAAACGTTTTTAGCAAAAATCATATTCTTGATA
TTATTGAAATTGCTGAAAAAAATTGTTTGCCTATAATTTCTGATGAAATTTATGAATTCT
TCACAATTCCAAGTGTTAAATTTTACTCATTTGCGACACTTTCAAAAACTGTTCCAGTTT
TGG
>g14131.t3 Gene=g14131 Length=239
MAASKIIKKWNILPTEFSKNSINPLRLLWETQQPKGNPKLKEIHLQPGDPTLYGNFPPHP
IIAKAISDAALNDKFSYVECLGSRIARQAVADYSQHMGKITADDIILTTGCSMAVEVAIR
SLANPDENVLVPRPSWNYSTWIHGSGILAKYYNLNPEKEWEIDLEDLQNKIDKKTKAIIV
NSPGNPCGNVFSKNHILDIIEIAEKNCLPIISDEIYEFFTIPSVKFYSFATLSKTVPVL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g14131.t3 | CDD | cd00609 | AAT_like | 43 | 235 | 3.6808E-41 |
| 7 | g14131.t3 | Coils | Coil | Coil | 157 | 177 | - |
| 5 | g14131.t3 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 42 | 63 | 8.2E-51 |
| 6 | g14131.t3 | Gene3D | G3DSA:3.40.640.10 | - | 64 | 238 | 8.2E-51 |
| 2 | g14131.t3 | PANTHER | PTHR45744 | TYROSINE AMINOTRANSFERASE | 15 | 239 | 2.4E-63 |
| 3 | g14131.t3 | PANTHER | PTHR45744:SF2 | TYROSINE AMINOTRANSFERASE | 15 | 239 | 2.4E-63 |
| 1 | g14131.t3 | Pfam | PF00155 | Aminotransferase class I and II | 43 | 236 | 8.1E-33 |
| 4 | g14131.t3 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 38 | 232 | 5.59E-44 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0009058 | biosynthetic process | BP |
| GO:0003824 | catalytic activity | MF |
| GO:0030170 | pyridoxal phosphate binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
