General information for g14131.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Tyrosine aminotransferase.
Parent gene
- The parent gene g14131 is located on chr_1: 34838871..34839437 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14131 | g14131.t4 | TSS | g14131.t4 | 34838038 | 34838038 |
| chr_1 | g14131 | g14131.t4 | isoform | g14131.t4 | 34838080 | 34839437 |
| chr_1 | g14131 | g14131.t4 | exon | g14131.t4.exon1 | 34838080 | 34838797 |
| chr_1 | g14131 | g14131.t4 | cds | g14131.t4.CDS1 | 34838080 | 34838797 |
| chr_1 | g14131 | g14131.t4 | exon | g14131.t4.exon2 | 34838855 | 34839049 |
| chr_1 | g14131 | g14131.t4 | cds | g14131.t4.CDS2 | 34838855 | 34839049 |
| chr_1 | g14131 | g14131.t4 | exon | g14131.t4.exon3 | 34839126 | 34839437 |
| chr_1 | g14131 | g14131.t4 | cds | g14131.t4.CDS3 | 34839126 | 34839130 |
| chr_1 | g14131 | g14131.t4 | TTS | g14131.t4 | 34839477 | 34839477 |
Sequences
>g14131.t4 Gene=g14131 Length=1225
ATGGCTGCATCAAAAATTATTAAAAAATGGAATATTTTACCTACTGAATTTTCTAAAAAT
TCCATTAATCCATTAAGACTTTTATGGGAGACTCAACAGCCGAAAGGAAATCCTAAATTG
AAAGAAATTCATTTGCAGCCAGGTGATCCAACTCTTTATGGAAATTTTCCACCTCACCCG
ATTATTGCAAAAGCAATTTCAGACGCAGCTCTTAATGATAAATTTTCATATGTGGAATGT
CTTGGAAGCCGAATAGCAAGACAAGCAGTTGCTGACTACAGTCAACATATGGGAAAGATC
ACAGCTGACGATATAATTTTAACAACTGGTTGTTCTATGGCTGTTGAAGTTGCAATTCGT
TCATTAGCAAATCCTGATGAAAATGTTTTAGTTCCGCGTCCTTCATGGAATTATTCGACC
TGGATCCACGGTTCGGGAATTTTAGCGAAATATTACAATTTAAATCCAGAAAAAGAATGG
GAAATTGATTTGGAAGATTTGCAAAATAAAATCGATAAAAAAACTAAAGCTATAATAGTT
AATAGCCCGGGCAACCCTTGTGGAAACGTTTTTAGCAAAAATCATATTCTTGATATTATT
GAAATTGCTGAAAAAAATTGTTTGCCTATAATTTCTGATGAAATTTATGAATTCTTCACA
ATTCCAAGTGTTAAATTTTACTCATTTGCGACACTTTCAAAAACTGTTCCAGTTTTGGTT
TGTTCGGGATTAACAAAAAGGTTTTTGACTCCTGGTATTCGTTTGGATTGGGTAATTGTG
AATGATAGAGGAGATAAACTAAAGGAAATAAGAAAAGGCTTTCAAAATATTGCTGGAAGA
AATTTTTATCCAAATAGCACTGTGCAACATGCATTACCGAAAATTTTGAGTGAAGTCCCA
CAATCATTTTTTGAATAATGCAAAAATTGTCTACGATCGATTGAAAAATGTTCCAGGACT
TAATCCGATCATGTCAAAAGGAGCAATTTATATGTTGATTGGCATAAAACTTGAAAAATT
TCCTAATATCAACTCGAGTCTTGAGTTCATGCAACGTTTAGCAAACGAACAAAGTGTTTT
TACATTTCCCTCTGAAGTCTTTAATTTTCCAGGATTTTTGCGTTTTGTACTGACTTCTCA
CGATGAAGCTTTGGTTGAAGCATGTGAACGTCTTTCTAAATTTTGTGAGAAATATTATAA
AGATAAAACTTATGAGACTCTTTAA
>g14131.t4 Gene=g14131 Length=305
MAASKIIKKWNILPTEFSKNSINPLRLLWETQQPKGNPKLKEIHLQPGDPTLYGNFPPHP
IIAKAISDAALNDKFSYVECLGSRIARQAVADYSQHMGKITADDIILTTGCSMAVEVAIR
SLANPDENVLVPRPSWNYSTWIHGSGILAKYYNLNPEKEWEIDLEDLQNKIDKKTKAIIV
NSPGNPCGNVFSKNHILDIIEIAEKNCLPIISDEIYEFFTIPSVKFYSFATLSKTVPVLV
CSGLTKRFLTPGIRLDWVIVNDRGDKLKEIRKGFQNIAGRNFYPNSTVQHALPKILSEVP
QSFFE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g14131.t4 | CDD | cd00609 | AAT_like | 43 | 305 | 1.01916E-53 |
| 6 | g14131.t4 | Coils | Coil | Coil | 157 | 177 | - |
| 5 | g14131.t4 | Gene3D | G3DSA:3.40.640.10 | - | 61 | 299 | 1.7E-55 |
| 2 | g14131.t4 | PANTHER | PTHR45744 | TYROSINE AMINOTRANSFERASE | 15 | 305 | 3.7E-87 |
| 3 | g14131.t4 | PANTHER | PTHR45744:SF2 | TYROSINE AMINOTRANSFERASE | 15 | 305 | 3.7E-87 |
| 1 | g14131.t4 | Pfam | PF00155 | Aminotransferase class I and II | 43 | 301 | 5.2E-42 |
| 4 | g14131.t4 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 38 | 299 | 1.45E-53 |
| 7 | g14131.t4 | TIGRFAM | TIGR01265 | tyr_nico_aTase: tyrosine/nicotianamine family aminotransferase | 10 | 305 | 6.8E-91 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0009058 | biosynthetic process | BP |
| GO:0006520 | cellular amino acid metabolic process | BP |
| GO:0008483 | transaminase activity | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0030170 | pyridoxal phosphate binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
