General information for g14131.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Tyrosine aminotransferase.
Parent gene
- The parent gene g14131 is located on chr_1: 34838871..34839437 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14131 | g14131.t5 | TSS | g14131.t5 | 34838628 | 34838628 |
| chr_1 | g14131 | g14131.t5 | isoform | g14131.t5 | 34838871 | 34839437 |
| chr_1 | g14131 | g14131.t5 | exon | g14131.t5.exon1 | 34838871 | 34839072 |
| chr_1 | g14131 | g14131.t5 | cds | g14131.t5.CDS1 | 34839064 | 34839072 |
| chr_1 | g14131 | g14131.t5 | exon | g14131.t5.exon2 | 34839126 | 34839437 |
| chr_1 | g14131 | g14131.t5 | cds | g14131.t5.CDS2 | 34839126 | 34839437 |
| chr_1 | g14131 | g14131.t5 | TTS | g14131.t5 | 34839477 | 34839477 |
Sequences
>g14131.t5 Gene=g14131 Length=514
AAAAAGGTTTTTGACTCCTGGTATTCGTTTGGATTGGGTAATTGTGAATGATAGAGGAGA
TAAACTAAAGGAAATAAGAAAAGGCTTTCAAAATATTGCTGGAAGAAATTTTTATCCAAA
TAGCACTGTGCAACATGCATTACCGAAAATTTTGAGTGAAGTCCCACAATCATTTTTTGA
TAAGAATAATCAAATGATTCATAATAATGCAAAAATTGTCTACGATCGATTGAAAAATGT
TCCAGGACTTAATCCGATCATGTCAAAAGGAGCAATTTATATGTTGATTGGCATAAAACT
TGAAAAATTTCCTAATATCAACTCGAGTCTTGAGTTCATGCAACGTTTAGCAAACGAACA
AAGTGTTTTTACATTTCCCTCTGAAGTCTTTAATTTTCCAGGATTTTTGCGTTTTGTACT
GACTTCTCACGATGAAGCTTTGGTTGAAGCATGTGAACGTCTTTCTAAATTTTGTGAGAA
ATATTATAAAGATAAAACTTATGAGACTCTTTAA
>g14131.t5 Gene=g14131 Length=106
MIHNNAKIVYDRLKNVPGLNPIMSKGAIYMLIGIKLEKFPNINSSLEFMQRLANEQSVFT
FPSEVFNFPGFLRFVLTSHDEALVEACERLSKFCEKYYKDKTYETL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14131.t5 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 1 | 99 | 0 |
| 2 | g14131.t5 | PANTHER | PTHR45744 | TYROSINE AMINOTRANSFERASE | 2 | 100 | 0 |
| 3 | g14131.t5 | PANTHER | PTHR45744:SF2 | TYROSINE AMINOTRANSFERASE | 2 | 100 | 0 |
| 1 | g14131.t5 | Pfam | PF00155 | Aminotransferase class I and II | 2 | 90 | 0 |
| 4 | g14131.t5 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 2 | 98 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0009058 | biosynthetic process | BP |
| GO:0003824 | catalytic activity | MF |
| GO:0030170 | pyridoxal phosphate binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
