General information for g14132.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutamate receptor ionotropic, NMDA 2B.
Parent gene
- The parent gene g14132 is located on chr_1: 34845808..34847151 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14132 | g14132.t3 | isoform | g14132.t3 | 34845808 | 34847151 |
| chr_1 | g14132 | g14132.t3 | exon | g14132.t3.exon1 | 34845808 | 34845898 |
| chr_1 | g14132 | g14132.t3 | cds | g14132.t3.CDS1 | 34845810 | 34845898 |
| chr_1 | g14132 | g14132.t3 | exon | g14132.t3.exon2 | 34845979 | 34846319 |
| chr_1 | g14132 | g14132.t3 | cds | g14132.t3.CDS2 | 34845979 | 34846319 |
| chr_1 | g14132 | g14132.t3 | exon | g14132.t3.exon3 | 34846470 | 34846764 |
| chr_1 | g14132 | g14132.t3 | cds | g14132.t3.CDS3 | 34846470 | 34846764 |
| chr_1 | g14132 | g14132.t3 | exon | g14132.t3.exon4 | 34847010 | 34847151 |
| chr_1 | g14132 | g14132.t3 | cds | g14132.t3.CDS4 | 34847010 | 34847151 |
| chr_1 | g14132 | g14132.t3 | TSS | g14132.t3 | NA | NA |
| chr_1 | g14132 | g14132.t3 | TTS | g14132.t3 | NA | NA |
Sequences
>g14132.t3 Gene=g14132 Length=869
ATGAAAAATTTGTTGACTTTATGTTTGCTCATAGGAGCTTCTACTGCCTTTAGAAATCGT
GGCAGTAATACACTAAGTAATAGCAATAGTCAATCATCAAATCAATTAAATATAGGATTA
GTTGCTCCTCATACTAATTTCGGAAAACGTGAATATTTGCGAGCAATAAACTCAGCTGTA
ACTGGTTTATCGAAAGCACGTGGTCAGAAATTGACTTTTCTCAAAGATTATGAATTTAAT
CCAGGAAACATTCACTTTGAGGCACTAACATTAAATCCAAGTCCAACTGCAATTCTGACA
ATTTTATGTAAACAATTTCTTCACCAAAATGTCAGTGCAATATTATATATGATGAATTAT
GAACAATATGGTAGATCTACTGCTTCAGCTCAATATTTTCTTCAACTTGCCGGCTATCTA
GGCATTCCTGTTATTGGTTGGAATGCTGATAATTCTGGTTTAGAAAGAAGAGCATCACAA
TCAACACTTCAATTACAATTAGCACCATCAATTGAACATCAAGCTGCTGCTATGCTTTCA
ATATTAGAGAGATATAAATGGCATCAATTCAGTATTGTCACATCTCCCATCGCAGGTCAT
GATGATTTCGTGCAAGCTGTACGAGAACATGTAGCAGAAATGCAAGATCGCTTTAAATTT
ACGATTCTTAATTCAATTATCGTAACACGCTCCAGTGACTTGACAGATTTAATAAACAGT
GAAGCTCGAGTAATGTTACTTTATTGCACAAAAAGTGAAGCCATTGATATTTTGAAAGCC
GCCGAGACTCATCACTTGACTGGTGAAAATTATGTTTGGGTCGTGACACAATCGGTTATC
GAAAATACACAACCACACAATAGCTTTCC
>g14132.t3 Gene=g14132 Length=289
MKNLLTLCLLIGASTAFRNRGSNTLSNSNSQSSNQLNIGLVAPHTNFGKREYLRAINSAV
TGLSKARGQKLTFLKDYEFNPGNIHFEALTLNPSPTAILTILCKQFLHQNVSAILYMMNY
EQYGRSTASAQYFLQLAGYLGIPVIGWNADNSGLERRASQSTLQLQLAPSIEHQAAAMLS
ILERYKWHQFSIVTSPIAGHDDFVQAVREHVAEMQDRFKFTILNSIIVTRSSDLTDLINS
EARVMLLYCTKSEAIDILKAAETHHLTGENYVWVVTQSVIENTQPHNSF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14132.t3 | Gene3D | G3DSA:3.40.50.2300 | - | 169 | 289 | 2.9E-28 |
| 2 | g14132.t3 | PANTHER | PTHR18966:SF391 | NMDA RECEPTOR 2, ISOFORM C | 74 | 288 | 1.6E-71 |
| 3 | g14132.t3 | PANTHER | PTHR18966 | IONOTROPIC GLUTAMATE RECEPTOR | 74 | 288 | 1.6E-71 |
| 1 | g14132.t3 | Pfam | PF01094 | Receptor family ligand binding region | 102 | 286 | 3.5E-22 |
| 9 | g14132.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 16 | - |
| 10 | g14132.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 11 | g14132.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 11 | - |
| 12 | g14132.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 12 | 16 | - |
| 8 | g14132.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 17 | 289 | - |
| 4 | g14132.t3 | SUPERFAMILY | SSF53822 | Periplasmic binding protein-like I | 30 | 287 | 1.08E-30 |
| 6 | g14132.t3 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 16 | - |
| 5 | g14132.t3 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 18 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed