General information for g14135.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14135 is located on chr_1: 34851269..34851991 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14135 | g14135.t7 | isoform | g14135.t7 | 34851269 | 34851991 |
| chr_1 | g14135 | g14135.t7 | exon | g14135.t7.exon1 | 34851269 | 34851783 |
| chr_1 | g14135 | g14135.t7 | cds | g14135.t7.CDS1 | 34851270 | 34851783 |
| chr_1 | g14135 | g14135.t7 | exon | g14135.t7.exon2 | 34851849 | 34851991 |
| chr_1 | g14135 | g14135.t7 | cds | g14135.t7.CDS2 | 34851849 | 34851991 |
| chr_1 | g14135 | g14135.t7 | TSS | g14135.t7 | NA | NA |
| chr_1 | g14135 | g14135.t7 | TTS | g14135.t7 | NA | NA |
Sequences
>g14135.t7 Gene=g14135 Length=658
ATGGATTCTAAAAGAATTAAAATTTTACAAAAGAATCCGAATGCTCTTTTTAAACAATGG
CTACGAGAATTTATTGAAGATGCTGTCAAGAAAAAGAAAAAAATCAGTAAAACTTATCAA
AAAGCTTTGGATTCTTTAGAAAGATATCCTTTGACATTATATAGTGGACATGATTGTGCT
ATTTTAGAGGGTTTTGGTCCAAAAATATGTGAATTGCTCGAGGAAAAATTGCAAAAGTAT
TTCGCAAATAATTTTGACGATCATGAATTGAGAAATCTTTGTTATAAAGACAAAATTGCA
TGCATTCGTAAGAGAGAACGTGAAGAACTTCAAGAATTAATTAAAGATATTGAAGCCGCA
AATTTAATAGATGAATCGACAATGATTGCTAATTTAAGGAGAACTTTAAGCACAATTGAA
GAGCATAATGACAAAAATGATGGTGAAGTTGAAGAAATAACAATGAGTGAGATAGTACCT
GAAAACGATAAGAAATCAGAAAAGGAAAAAATCAATTTTCAAATCATAGATGAAGAAAAT
TCTAATAGTTCTGATGATTCATTAGATAGACTTCTTAAAAAATATGATCCAAAAGCGGGT
GAAGAAAGGAAGAAAAAAAAGAAACTCGAAAAGAGAAAACCATTAACGACAGTTGATT
>g14135.t7 Gene=g14135 Length=219
MDSKRIKILQKNPNALFKQWLREFIEDAVKKKKKISKTYQKALDSLERYPLTLYSGHDCA
ILEGFGPKICELLEEKLQKYFANNFDDHELRNLCYKDKIACIRKREREELQELIKDIEAA
NLIDESTMIANLRRTLSTIEEHNDKNDGEVEEITMSEIVPENDKKSEKEKINFQIIDEEN
SNSSDDSLDRLLKKYDPKAGEERKKKKKLEKRKPLTTVD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14135.t7 | Coils | Coil | Coil | 103 | 123 | - |
| 6 | g14135.t7 | Coils | Coil | Coil | 206 | 219 | - |
| 5 | g14135.t7 | Gene3D | G3DSA:1.10.150.110 | DNA polymerase beta | 13 | 84 | 1.8E-25 |
| 3 | g14135.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 219 | - |
| 4 | g14135.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 175 | - |
| 2 | g14135.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 204 | - |
| 1 | g14135.t7 | SUPERFAMILY | SSF47802 | DNA polymerase beta, N-terminal domain-like | 9 | 79 | 9.16E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
