General information for g14141.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14141 is located on chr_1: 34884881..34890616 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14141 | g14141.t2 | isoform | g14141.t2 | 34884881 | 34890222 |
| chr_1 | g14141 | g14141.t2 | exon | g14141.t2.exon1 | 34884881 | 34885147 |
| chr_1 | g14141 | g14141.t2 | cds | g14141.t2.CDS1 | 34884881 | 34885147 |
| chr_1 | g14141 | g14141.t2 | exon | g14141.t2.exon2 | 34888617 | 34888831 |
| chr_1 | g14141 | g14141.t2 | cds | g14141.t2.CDS2 | 34888617 | 34888831 |
| chr_1 | g14141 | g14141.t2 | exon | g14141.t2.exon3 | 34888898 | 34889077 |
| chr_1 | g14141 | g14141.t2 | cds | g14141.t2.CDS3 | 34888898 | 34889077 |
| chr_1 | g14141 | g14141.t2 | exon | g14141.t2.exon4 | 34889496 | 34889658 |
| chr_1 | g14141 | g14141.t2 | cds | g14141.t2.CDS4 | 34889496 | 34889658 |
| chr_1 | g14141 | g14141.t2 | exon | g14141.t2.exon5 | 34889724 | 34889989 |
| chr_1 | g14141 | g14141.t2 | cds | g14141.t2.CDS5 | 34889724 | 34889989 |
| chr_1 | g14141 | g14141.t2 | exon | g14141.t2.exon6 | 34890047 | 34890222 |
| chr_1 | g14141 | g14141.t2 | cds | g14141.t2.CDS6 | 34890047 | 34890221 |
| chr_1 | g14141 | g14141.t2 | TTS | g14141.t2 | 34891194 | 34891194 |
| chr_1 | g14141 | g14141.t2 | TSS | g14141.t2 | NA | NA |
Sequences
>g14141.t2 Gene=g14141 Length=1267
ATGATTACAAGAAGAAATTGGCTACTCCGTTGTAGCATTTTTGCAAACGTTATTGTCCTC
CTATACATTTGTAGTCATGTAATGATTGGGAACAACAATTCAAATAATATTAGTGGCAGT
AATGCATTTTTCATTCAACCATCTTCAAATCAACAGTCAACACAGCGATCGCAAGCTCAA
CTCTATCAAGAAGAGCAAGAATTAGCGAGTATATTGCATAATAAAGAACTAGAACTTCAA
AAACATCTTAAAATGCAAGAAATGCAGAATTCTGAAAATACCAAAATTAAAGAGAGTGAT
AACGTAAAATTATCAGAGCAACTTCCAGACGAAGAAAGTCGTTTTGAAATACCAACTGAC
CAATCTTCATTGCAGCAACAACAAAAAAGCGATGTCCTCTTTACAGATACCAATGGGAAC
AATAATAATAATAATAGTGAACTCTTTTCAACGCAATCAAATGATTTAGAAACAAAACTG
AAAAACATTCTCAATTGCCATACAAAAGATTATGAGCCCTATGTGGAGCAACGTGGAGAC
TTTTGGGTGCTAAAAAATTACATTCGTGCTGAGCACGGTGAACTCAAATGTTATGAAACG
ATAACATACACTACGCACGCTGACTTTACATTCTTGGATAATTTAATTCCATTATTGGAA
AGATGGAATGCTCCAGTTAGTATAGCATTACACGCGCCAGGTAGCGACTTCTTGCCTACC
ATCAATTCCATCAAATATTTAAGAGATTGCTTGCCCGAGAGCAACTTGGTGCGGCAATTT
GTAACTTTTCATATTTATTTTAGCAGTAAACACGTACCAAAAGTAGTTCCTAAGTATGAC
AAAGTTCTATTTCCATCATTCAACTGCAGTCTTAATCCGCCGTTCTTTAATGCGACATCA
GCGCAACTTTATAAGACACAAAAGAAGCTTCTGTATCCAGTGAATGTTGGAAGAAATATA
GCACGTGATGCGGCAATGACTCATTTTATACTTGCCAGTGATATTGAACTTTATCCCAAT
CCTGGTCTTGTAAGGAAATTCCTTGAAATGATTGCTCGTAAAGGTGACTCATGGGAGAAT
AATAATCCAAGGGTTTTTCCATTGTCAATTTTTGAAGTTGATAGCACAGTAGCAGTGCCA
CGTGATAAGACCGAACTTCAAGAGCTTCTTAGAACTAATAAAGCCATTCCATTTCATAAA
CGTGTCTGTGCAAGTTGTCATGGTGTACCAAAATCTAAAGAATGGATGGCTGCAAATGAG
ACTGAAG
>g14141.t2 Gene=g14141 Length=422
MITRRNWLLRCSIFANVIVLLYICSHVMIGNNNSNNISGSNAFFIQPSSNQQSTQRSQAQ
LYQEEQELASILHNKELELQKHLKMQEMQNSENTKIKESDNVKLSEQLPDEESRFEIPTD
QSSLQQQQKSDVLFTDTNGNNNNNNSELFSTQSNDLETKLKNILNCHTKDYEPYVEQRGD
FWVLKNYIRAEHGELKCYETITYTTHADFTFLDNLIPLLERWNAPVSIALHAPGSDFLPT
INSIKYLRDCLPESNLVRQFVTFHIYFSSKHVPKVVPKYDKVLFPSFNCSLNPPFFNATS
AQLYKTQKKLLYPVNVGRNIARDAAMTHFILASDIELYPNPGLVRKFLEMIARKGDSWEN
NNPRVFPLSIFEVDSTVAVPRDKTELQELLRTNKAIPFHKRVCASCHGVPKSKEWMAANE
TE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14141.t2 | Coils | Coil | Coil | 74 | 94 | - |
| 4 | g14141.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 128 | - |
| 5 | g14141.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 117 | - |
| 2 | g14141.t2 | PANTHER | PTHR47412 | FI01434P-RELATED | 2 | 421 | 4.6E-126 |
| 1 | g14141.t2 | Pfam | PF13896 | Glycosyl-transferase for dystroglycan | 201 | 420 | 2.8E-69 |
| 7 | g14141.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 6 | - |
| 9 | g14141.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
| 8 | g14141.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 30 | 422 | - |
| 3 | g14141.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed