Gene loci information

Transcript annotation

  • This transcript has been annotated as Inositol oxygenase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14152 g14152.t12 TTS g14152.t12 34970575 34970575
chr_1 g14152 g14152.t12 isoform g14152.t12 34970634 34972692
chr_1 g14152 g14152.t12 exon g14152.t12.exon1 34970634 34971225
chr_1 g14152 g14152.t12 cds g14152.t12.CDS1 34970870 34971225
chr_1 g14152 g14152.t12 exon g14152.t12.exon2 34971287 34971511
chr_1 g14152 g14152.t12 cds g14152.t12.CDS2 34971287 34971511
chr_1 g14152 g14152.t12 exon g14152.t12.exon3 34972118 34972254
chr_1 g14152 g14152.t12 cds g14152.t12.CDS3 34972118 34972254
chr_1 g14152 g14152.t12 exon g14152.t12.exon4 34972597 34972628
chr_1 g14152 g14152.t12 cds g14152.t12.CDS4 34972597 34972628
chr_1 g14152 g14152.t12 exon g14152.t12.exon5 34972687 34972692
chr_1 g14152 g14152.t12 cds g14152.t12.CDS5 34972687 34972692
chr_1 g14152 g14152.t12 TSS g14152.t12 34972746 34972746

Sequences

>g14152.t12 Gene=g14152 Length=992
ATGACAGCAACAATTTTAGATCCTTCAGAATTATTGAGACCGGAACCAGATTTCGCTCAC
CAATCGTTATCATCATTCAGAGACTATACAATTGATGAGAGTGATCCATTAAAGGAGCGA
GTTCGAAAAACCTACAGATTGATGCATCTTAATCAGACTGTTGACTATGTTAAAAAATGT
CATGAAAAGTGGCTGAAATTCAATCATGCAAAATTGACAGTTCGTGAAGCATTAGAAAAA
TTAAATGACTTGGTTGATGAAAGTGATCCGGATACATCTTTACCAAATATTGTTCATGCA
TTTCAATCAGCTGAAAGAGCTCGTGAGGAATTTCCTGAACATGATTGGCTTCATTTGACA
GCATTGATTCATGATTTGGGTAAAATTATGGCATTTTATGATATGCCACAATGGGCAGTT
GTAGGTGATACATTTGTTGTCGGCTGCGAGTGGTCTGAAAATATTGTTTATCGTAATGAA
AGCTTTGAGGGAAATCCTGATGGAAATAATCCAAAGTATAACACAAAATATGGCATGTAT
AAGCCAAATTGCGGCCTAGATGAACTGCTGCTCTCTTGGGGTCATGACGAATACATGTAT
CAAGTTCTCAAGCACAACAAGAGCAAACTTCCTGAACAGGCATTGAAAATTATTCGCTTT
CATTCTTTCTATCCCTGGCATTCTTCTGGCGATTATCAACATTTGTTAAAGGATGAAGAT
GAAGAAACTAAAAGATGGGTTTTGATTTTTAAGTAAGTTATTAAACTTCTTTAAATTATT
TTATTTCTTCAAAATTTTCATAAAATATTTGTCGATTTCTTAAGTTTTTTAATTATTAAC
GATTTTAAAATTAATCCAACTATTTTTTAAAAATTTCTTTTAGCCGCTACGATCTTTACA
CAAAGTCAACTAAAGTACCAGACATTGAAGCATTGTGGCCTTATTATGAAAAATTGATTG
AAAAATACGTTCCAGGAGTTCTCGAGTGGTGA

>g14152.t12 Gene=g14152 Length=251
MTATILDPSELLRPEPDFAHQSLSSFRDYTIDESDPLKERVRKTYRLMHLNQTVDYVKKC
HEKWLKFNHAKLTVREALEKLNDLVDESDPDTSLPNIVHAFQSAERAREEFPEHDWLHLT
ALIHDLGKIMAFYDMPQWAVVGDTFVVGCEWSENIVYRNESFEGNPDGNNPKYNTKYGMY
KPNCGLDELLLSWGHDEYMYQVLKHNKSKLPEQALKIIRFHSFYPWHSSGDYQHLLKDED
EETKRWVLIFK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g14152.t12 PANTHER PTHR12588 MYOINOSITOL OXYGENASE 23 250 0
3 g14152.t12 PANTHER PTHR12588:SF0 INOSITOL OXYGENASE 23 250 0
1 g14152.t12 Pfam PF05153 Myo-inositol oxygenase 38 250 0
4 g14152.t12 SUPERFAMILY SSF109604 HD-domain/PDEase-like 29 250 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0019310 inositol catabolic process BP
GO:0005506 iron ion binding MF
GO:0055114 NA NA
GO:0005737 cytoplasm CC
GO:0050113 inositol oxygenase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed