General information for g14152.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Inositol oxygenase.
Parent gene
- The parent gene g14152 is located on chr_1: 34970634..34972692 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14152 | g14152.t3 | TTS | g14152.t3 | 34970575 | 34970575 |
| chr_1 | g14152 | g14152.t3 | isoform | g14152.t3 | 34970634 | 34972628 |
| chr_1 | g14152 | g14152.t3 | exon | g14152.t3.exon1 | 34970634 | 34970742 |
| chr_1 | g14152 | g14152.t3 | cds | g14152.t3.CDS1 | 34970634 | 34970742 |
| chr_1 | g14152 | g14152.t3 | exon | g14152.t3.exon2 | 34970922 | 34971225 |
| chr_1 | g14152 | g14152.t3 | cds | g14152.t3.CDS2 | 34970922 | 34971225 |
| chr_1 | g14152 | g14152.t3 | exon | g14152.t3.exon3 | 34971287 | 34971511 |
| chr_1 | g14152 | g14152.t3 | cds | g14152.t3.CDS3 | 34971287 | 34971511 |
| chr_1 | g14152 | g14152.t3 | exon | g14152.t3.exon4 | 34972118 | 34972254 |
| chr_1 | g14152 | g14152.t3 | cds | g14152.t3.CDS4 | 34972118 | 34972151 |
| chr_1 | g14152 | g14152.t3 | exon | g14152.t3.exon5 | 34972597 | 34972628 |
| chr_1 | g14152 | g14152.t3 | TSS | g14152.t3 | 34972746 | 34972746 |
Sequences
>g14152.t3 Gene=g14152 Length=807
GCAACAATTTTAGATCCTTCAGAATTATTGAGACCGGAACCAGATTTCGCTCACCAATCG
TTATCATCATTCAGAGACTATACAATTGATGAGAGTGATCCATTAAAGGAGCGAGTTCGA
AAAACCTACAGATTGATGCATCTTAATCAGACTGTTGACTATGTTAAAAAATGTCATGAA
AAGTGGCTGAAATTCAATCATGCAAAATTGACAGTTCGTGAAGCATTAGAAAAATTAAAT
GACTTGGTTGATGAAAGTGATCCGGATACATCTTTACCAAATATTGTTCATGCATTTCAA
TCAGCTGAAAGAGCTCGTGAGGAATTTCCTGAACATGATTGGCTTCATTTGACAGCATTG
ATTCATGATTTGGGTAAAATTATGGCATTTTATGATATGCCACAATGGGCAGTTGTAGGT
GATACATTTGTTGTCGGCTGCGAGTGGTCTGAAAATATTGTTTATCGTAATGAAAGCTTT
GAGGGAAATCCTGATGGAAATAATCCAAAGTATAACACAAAATATGGCATGTATAAGCCA
AATTGCGGCCTAGATGAACTGCTGCTCTCTTGGGGTCATGACGAATACATGTATCAAGTT
CTCAAGCACAACAAGAGCAAACTTCCTGAACAGGCATTGAAAATTATTCGCTTTCATTCT
TTCTATCCCTGGCATTCTTCTGGCGATTATCAACATTTCCGCTACGATCTTTACACAAAG
TCAACTAAAGTACCAGACATTGAAGCATTGTGGCCTTATTATGAAAAATTGATTGAAAAA
TACGTTCCAGGAGTTCTCGAGTGGTGA
>g14152.t3 Gene=g14152 Length=223
MHLNQTVDYVKKCHEKWLKFNHAKLTVREALEKLNDLVDESDPDTSLPNIVHAFQSAERA
REEFPEHDWLHLTALIHDLGKIMAFYDMPQWAVVGDTFVVGCEWSENIVYRNESFEGNPD
GNNPKYNTKYGMYKPNCGLDELLLSWGHDEYMYQVLKHNKSKLPEQALKIIRFHSFYPWH
SSGDYQHFRYDLYTKSTKVPDIEALWPYYEKLIEKYVPGVLEW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g14152.t3 | PANTHER | PTHR12588 | MYOINOSITOL OXYGENASE | 1 | 223 | 0 |
| 3 | g14152.t3 | PANTHER | PTHR12588:SF0 | INOSITOL OXYGENASE | 1 | 223 | 0 |
| 1 | g14152.t3 | Pfam | PF05153 | Myo-inositol oxygenase | 1 | 223 | 0 |
| 4 | g14152.t3 | SUPERFAMILY | SSF109604 | HD-domain/PDEase-like | 1 | 223 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0019310 | inositol catabolic process | BP |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
| GO:0005737 | cytoplasm | CC |
| GO:0050113 | inositol oxygenase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed