Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14157 g14157.t1 TTS g14157.t1 35063480 35063480
chr_1 g14157 g14157.t1 isoform g14157.t1 35063544 35064436
chr_1 g14157 g14157.t1 exon g14157.t1.exon1 35063544 35064015
chr_1 g14157 g14157.t1 cds g14157.t1.CDS1 35063544 35064015
chr_1 g14157 g14157.t1 exon g14157.t1.exon2 35064069 35064127
chr_1 g14157 g14157.t1 cds g14157.t1.CDS2 35064069 35064127
chr_1 g14157 g14157.t1 exon g14157.t1.exon3 35064182 35064230
chr_1 g14157 g14157.t1 cds g14157.t1.CDS3 35064182 35064230
chr_1 g14157 g14157.t1 exon g14157.t1.exon4 35064286 35064345
chr_1 g14157 g14157.t1 cds g14157.t1.CDS4 35064286 35064345
chr_1 g14157 g14157.t1 exon g14157.t1.exon5 35064402 35064436
chr_1 g14157 g14157.t1 cds g14157.t1.CDS5 35064402 35064436
chr_1 g14157 g14157.t1 TSS g14157.t1 35064480 35064480

Sequences

>g14157.t1 Gene=g14157 Length=675
ATGTCGAAGCCAACTTTATATTATCATCCACTAAGTCCTCCTTCACGCGCACCATGCTTG
ATTGCTAAAGAAATTGGTTTAGATATCAATTTGGAAGTTATCGATTTTCTCAACTCTGAG
CACACAAGTGAAAAATTTACTAAGATTAACCCAGCTCAAACAATCCCTGCTATGGTTGAT
AGTGACTTCATTGTTTGTGACAGTCATGCCATATGCATCTATTTAATTGAGAAATATGCC
AAGGATGATTATTTATATCCGAAAAATGATCTAAAGCTTCGTACTGTTATCAACGATCGA
CTTTTCTTTGATGCTTCATTCCTTTTTCCAAGGGGTTTGAATGTGATGCTTCCTGTTGTT
ATGCAAGGTCAAGCTGAAGTACCAGAAGAGAAAGTTCAACAAATTCATCGTGGTTATCGC
ATTGTTGAAAATTATCTTTCAACTTCAAAATGGATAGCTTCAAATGATCACATGACATTA
GCTGATCTTGCTATTTTTGCGTGGATGGAATCATTTACTCAAGTTTTTACTATTGAAAAC
TATCCAAAACTAACAACATGGTTGAAAGAAATGAGAAAATTGCCATATTATGAAGAAGCT
AATAAAAAAGGTGCTGATCTTCATATTCAAATTTTCCGCAGTGCATTGGAGAAAAACAAA
AAAGCTAAAAAATGA

>g14157.t1 Gene=g14157 Length=224
MSKPTLYYHPLSPPSRAPCLIAKEIGLDINLEVIDFLNSEHTSEKFTKINPAQTIPAMVD
SDFIVCDSHAICIYLIEKYAKDDYLYPKNDLKLRTVINDRLFFDASFLFPRGLNVMLPVV
MQGQAEVPEEKVQQIHRGYRIVENYLSTSKWIASNDHMTLADLAIFAWMESFTQVFTIEN
YPKLTTWLKEMRKLPYYEEANKKGADLHIQIFRSALEKNKKAKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g14157.t1 CDD cd03177 GST_C_Delta_Epsilon 92 206 0.000
8 g14157.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 80 0.000
7 g14157.t1 Gene3D G3DSA:1.20.1050.10 - 81 223 0.000
3 g14157.t1 PANTHER PTHR43969:SF3 GLUTATHIONE S TRANSFERASE E11, ISOFORM A-RELATED 1 221 0.000
4 g14157.t1 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 221 0.000
2 g14157.t1 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 80 0.000
1 g14157.t1 Pfam PF00043 Glutathione S-transferase, C-terminal domain 116 195 0.000
10 g14157.t1 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 83 22.385
9 g14157.t1 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 90 222 14.970
12 g14157.t1 SFLD SFLDG00358 Main (cytGST) 3 217 0.000
13 g14157.t1 SFLD SFLDG01153 Main.4: Theta-like 3 217 0.000
5 g14157.t1 SUPERFAMILY SSF52833 Thioredoxin-like 1 88 0.000
6 g14157.t1 SUPERFAMILY SSF47616 GST C-terminal domain-like 89 209 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values