Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14157 g14157.t9 TTS g14157.t9 35063480 35063480
chr_1 g14157 g14157.t9 isoform g14157.t9 35063544 35064436
chr_1 g14157 g14157.t9 exon g14157.t9.exon1 35063544 35064015
chr_1 g14157 g14157.t9 cds g14157.t9.CDS1 35063544 35064015
chr_1 g14157 g14157.t9 exon g14157.t9.exon2 35064069 35064117
chr_1 g14157 g14157.t9 cds g14157.t9.CDS2 35064069 35064100
chr_1 g14157 g14157.t9 exon g14157.t9.exon3 35064182 35064230
chr_1 g14157 g14157.t9 exon g14157.t9.exon4 35064362 35064436
chr_1 g14157 g14157.t9 TSS g14157.t9 35064480 35064480

Sequences

>g14157.t9 Gene=g14157 Length=645
ATGTCGAAGCCAACTTTATATTATCATCCACTAAGGTGATTACATATTTTTGTTTAAATA
CATTTAAATCAATTTAGTTATCGATTTTCTCAACTCTGAGCACACAAGTGAAAAATTTAC
TAAGCTCAAACAATCCCTGCTATGGTTGATAGTGACTTCATTGTTTGTGACAGTCATGCC
ATATGCATCTATTTAATTGAGAAATATGCCAAGGATGATTATTTATATCCGAAAAATGAT
CTAAAGCTTCGTACTGTTATCAACGATCGACTTTTCTTTGATGCTTCATTCCTTTTTCCA
AGGGGTTTGAATGTGATGCTTCCTGTTGTTATGCAAGGTCAAGCTGAAGTACCAGAAGAG
AAAGTTCAACAAATTCATCGTGGTTATCGCATTGTTGAAAATTATCTTTCAACTTCAAAA
TGGATAGCTTCAAATGATCACATGACATTAGCTGATCTTGCTATTTTTGCGTGGATGGAA
TCATTTACTCAAGTTTTTACTATTGAAAACTATCCAAAACTAACAACATGGTTGAAAGAA
ATGAGAAAATTGCCATATTATGAAGAAGCTAATAAAAAAGGTGCTGATCTTCATATTCAA
ATTTTCCGCAGTGCATTGGAGAAAAACAAAAAAGCTAAAAAATGA

>g14157.t9 Gene=g14157 Length=167
MVDSDFIVCDSHAICIYLIEKYAKDDYLYPKNDLKLRTVINDRLFFDASFLFPRGLNVML
PVVMQGQAEVPEEKVQQIHRGYRIVENYLSTSKWIASNDHMTLADLAIFAWMESFTQVFT
IENYPKLTTWLKEMRKLPYYEEANKKGADLHIQIFRSALEKNKKAKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g14157.t9 CDD cd03177 GST_C_Delta_Epsilon 35 149 0.000e+00
6 g14157.t9 Gene3D G3DSA:1.20.1050.10 - 24 166 0.000e+00
2 g14157.t9 PANTHER PTHR43969:SF3 GLUTATHIONE S TRANSFERASE E11, ISOFORM A-RELATED 2 164 0.000e+00
3 g14157.t9 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 2 164 0.000e+00
1 g14157.t9 Pfam PF00043 Glutathione S-transferase, C-terminal domain 59 138 0.000e+00
8 g14157.t9 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 26 9.390e+00
7 g14157.t9 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 33 165 1.497e+01
4 g14157.t9 SUPERFAMILY SSF52833 Thioredoxin-like 2 31 2.640e-05
5 g14157.t9 SUPERFAMILY SSF47616 GST C-terminal domain-like 32 152 0.000e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed