General information for g14160.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Platelet-activating factor acetylhydrolase IB subunit beta-like protein.
Parent gene
- The parent gene g14160 is located on chr_1: 35068887..35069691 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14160 | g14160.t1 | TSS | g14160.t1 | 35068817 | 35068817 |
| chr_1 | g14160 | g14160.t1 | isoform | g14160.t1 | 35068887 | 35069691 |
| chr_1 | g14160 | g14160.t1 | exon | g14160.t1.exon1 | 35068887 | 35069171 |
| chr_1 | g14160 | g14160.t1 | cds | g14160.t1.CDS1 | 35068887 | 35069171 |
| chr_1 | g14160 | g14160.t1 | exon | g14160.t1.exon2 | 35069228 | 35069507 |
| chr_1 | g14160 | g14160.t1 | cds | g14160.t1.CDS2 | 35069228 | 35069507 |
| chr_1 | g14160 | g14160.t1 | exon | g14160.t1.exon3 | 35069570 | 35069691 |
| chr_1 | g14160 | g14160.t1 | cds | g14160.t1.CDS3 | 35069570 | 35069691 |
| chr_1 | g14160 | g14160.t1 | TTS | g14160.t1 | 35070348 | 35070348 |
Sequences
>g14160.t1 Gene=g14160 Length=687
ATGAGCATAAATCCTTGTTGTGTCGCAGAAGAACGAAAAGATATCGATGGAGATGATAGA
TGGATGTCAATCCACAATAGATTCTTATTAGAAGCTAGAGAAAAGGAATTCGAAGTTTTA
TTTTTGGGTGACGATATATTGTTGGAGTTAAATCATACGGAAATTTATAAAGATTTCGAA
GAGCTGCATCCAATGAATTTCAGCATAAGAGGCGATAAGATTGAGAACTTATTGTGGCGA
ATTACAATTGGTCGCGAACTAGATAATGTTAAACCAAAAATTATGGTAGTTCAAATTGGT
ACTAACAATACAAGTACTAATAATACTGAAGAAGAAATTAGTGAGGGCGTACTGGAAGTA
TTGAAAGAAATTCGCAAACGGCATGATTGTTTCATAGTTCTTTTAACTCTCTTACCTCGA
GGACATAAACCAAACAAACTCAGGGAAAAGAATGAAAAAGTTAATAACTTACTCATGGAG
AAAGTTCGTGGGATGTCCAAAGTTCAAATTATTGATATATCCAAGGGACTAATCAATGCT
GATGATTCAACTATATCTCATCACGACATGTATGACTATCTTAACCCGAGTAATGCAGCT
TATAAGAAAATTTTCGAACCTGTGTTGGATCTCTTAAATCAAATTTTAAATGAAAACGAA
AAGGAGCTCCTAACACCTTCTGAATAA
>g14160.t1 Gene=g14160 Length=228
MSINPCCVAEERKDIDGDDRWMSIHNRFLLEAREKEFEVLFLGDDILLELNHTEIYKDFE
ELHPMNFSIRGDKIENLLWRITIGRELDNVKPKIMVVQIGTNNTSTNNTEEEISEGVLEV
LKEIRKRHDCFIVLLTLLPRGHKPNKLREKNEKVNNLLMEKVRGMSKVQIIDISKGLINA
DDSTISHHDMYDYLNPSNAAYKKIFEPVLDLLNQILNENEKELLTPSE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14160.t1 | Gene3D | G3DSA:3.40.50.1110 | - | 2 | 225 | 0 |
| 2 | g14160.t1 | PANTHER | PTHR11852 | PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE | 13 | 219 | 0 |
| 3 | g14160.t1 | PANTHER | PTHR11852:SF0 | PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB SUBUNIT BETA HOMOLOG | 13 | 219 | 0 |
| 1 | g14160.t1 | Pfam | PF13472 | GDSL-like Lipase/Acylhydrolase family | 66 | 202 | 0 |
| 4 | g14160.t1 | SUPERFAMILY | SSF52266 | SGNH hydrolase | 12 | 216 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K16795 (platelet-activating factor acetylhydrolase IB subunit beta/gamma)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
