General information for g14174.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Uroporphyrinogen decarboxylase.
Parent gene
- The parent gene g14174 is located on chr_1: 35236950..35240093 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14174 | g14174.t3 | TSS | g14174.t3 | 35236699 | 35236699 |
| chr_1 | g14174 | g14174.t3 | isoform | g14174.t3 | 35236794 | 35237666 |
| chr_1 | g14174 | g14174.t3 | exon | g14174.t3.exon1 | 35236794 | 35236811 |
| chr_1 | g14174 | g14174.t3 | exon | g14174.t3.exon2 | 35236977 | 35237666 |
| chr_1 | g14174 | g14174.t3 | cds | g14174.t3.CDS1 | 35237059 | 35237664 |
| chr_1 | g14174 | g14174.t3 | TTS | g14174.t3 | 35238155 | 35238155 |
Sequences
>g14174.t3 Gene=g14174 Length=708
ATGCAATATCAACCGAAGGAAGAACTTTCCTGTGCTCAAAAATGACAATCTATTGCGTGC
GGCTCGTGGTGATAAAGTTGATCGAGTGCCGGTTTGGGTGATGAGACAAGCTGGAAGATA
TCTACCTGAATTTCGTGAAGTTCGCGCTGAAAGTGATTTCTTCAAAGTCTGTCGTACACC
TGAACTTGCTGTTGAAGTCACTATGCAACCTATTCGACGATTCGATCTTGATGCATCGAT
TATCTTTTCTGATATTCTCGTCATTCCACAAGCTCTTGGTATGGAAGTTGAAATGAGACC
AGGTCACGGACCGGTTTTTCCTGAGCCATTGCAAGATATTAAAGATGTGTCACGATTGAA
TGCTGATGGCGCTATCGATAGATTAAAATACGTTGGTGATGCAATTACACTCATGAGACA
TACACTCGAAGGAAAAGTTCCACTCTTTGGATTTACTGGTGCTCCATGGACACTTATGGG
TTACATGATTGAAGGAGGTGGCAGCAAAACAATGTCAAAGGCTCGTAGTTGGCTTAAAGA
TCATTCCGAAGAATCTCGCAATCTTCTTTCTCTTCTCACTGATGTTATTGTTGATTATTT
AGTGATGCAAGTGAAAGCTGGTGCACAAATTTTACAAGTGTTCGAATCAAGTGCTGAATA
TATCAGCAAAGAAGAATTTATTGAATTTGCACTGCCATACCTAAAAGA
>g14174.t3 Gene=g14174 Length=202
MRQAGRYLPEFREVRAESDFFKVCRTPELAVEVTMQPIRRFDLDASIIFSDILVIPQALG
MEVEMRPGHGPVFPEPLQDIKDVSRLNADGAIDRLKYVGDAITLMRHTLEGKVPLFGFTG
APWTLMGYMIEGGGSKTMSKARSWLKDHSEESRNLLSLLTDVIVDYLVMQVKAGAQILQV
FESSAEYISKEEFIEFALPYLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14174.t3 | Gene3D | G3DSA:3.20.20.210 | - | 1 | 202 | 1.6E-93 |
| 2 | g14174.t3 | PANTHER | PTHR21091:SF169 | UROPORPHYRINOGEN DECARBOXYLASE | 1 | 202 | 3.1E-106 |
| 3 | g14174.t3 | PANTHER | PTHR21091 | METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED | 1 | 202 | 3.1E-106 |
| 1 | g14174.t3 | Pfam | PF01208 | Uroporphyrinogen decarboxylase (URO-D) | 1 | 202 | 6.2E-79 |
| 5 | g14174.t3 | ProSitePatterns | PS00907 | Uroporphyrinogen decarboxylase signature 2. | 116 | 132 | - |
| 4 | g14174.t3 | SUPERFAMILY | SSF51726 | UROD/MetE-like | 1 | 202 | 2.79E-65 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004853 | uroporphyrinogen decarboxylase activity | MF |
| GO:0006779 | porphyrin-containing compound biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
