General information for g1421.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Methanethiol oxidase.
Parent gene
- The parent gene g1421 is located on chr_3: 10849986..10851172 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1421 | g1421.t2 | TSS | g1421.t2 | 10848160 | 10848160 |
| chr_3 | g1421 | g1421.t2 | isoform | g1421.t2 | 10848268 | 10849512 |
| chr_3 | g1421 | g1421.t2 | exon | g1421.t2.exon1 | 10848268 | 10848280 |
| chr_3 | g1421 | g1421.t2 | cds | g1421.t2.CDS1 | 10848268 | 10848280 |
| chr_3 | g1421 | g1421.t2 | exon | g1421.t2.exon2 | 10848732 | 10849032 |
| chr_3 | g1421 | g1421.t2 | cds | g1421.t2.CDS2 | 10848732 | 10849032 |
| chr_3 | g1421 | g1421.t2 | exon | g1421.t2.exon3 | 10849090 | 10849512 |
| chr_3 | g1421 | g1421.t2 | cds | g1421.t2.CDS3 | 10849090 | 10849510 |
| chr_3 | g1421 | g1421.t2 | TTS | g1421.t2 | NA | NA |
Sequences
>g1421.t2 Gene=g1421 Length=737
ATGTCTTCTGAAGAAGCTAAAAATGGACCAGGTTACCCATCTCCACTCTGGGCTTATGAA
AATGGACCAAGAGAAAAAATTCTTTATGTTGCAAACATTCAACCAAACTTAGAAGATGAA
AAAGGCGATTATTTAAGTGTTGTTGACGTTGATCCAGAAAGTCAGACTTATTGTCAAGTT
ATACATCGTGCATTTAGTGAAGCCAAAGGTCAAGAATTTCACCACATGGGTTGGAATACG
TGCTCAAGTCGTCATTGTTGCCAAAATACTAAAAGAAACAAACTTATTTTACCTTGTCTC
AATTCTGATGCCATTTATGTCTTTGATGTTGAATATAATTTAAAAAAGCCAAAAATTCAC
AAAGTTAATTATGGTGAAATGCTTCGTAGTCATGATGTGTCAGCACCACATACTGTTCAT
TGTTTACCATCAGGAAATTTAATGATTTCTACATTAGGCGATAAAGATGGAAATGCAAAA
GGCGATTTTATTTTGCTTGATAAAAATTTTGATGTTATTGGAACTTGGTCAAAAGATAAA
AAGGCATTGTGTGGCTATGACTTTTGGTATCAACCATATTTTGATGTTTTAATTGGAACT
GAATGGGGTGCACCTAAATTATTCCGTAAAGAGTTTAGTATTAGTGCTATGCAATCTACA
CGTGATTTTGGTCAACGATTGAATGTTTATTCATATAATGATGGAACATTGTTGGACACA
ATTGATCTTGGAATGGA
>g1421.t2 Gene=g1421 Length=245
MSSEEAKNGPGYPSPLWAYENGPREKILYVANIQPNLEDEKGDYLSVVDVDPESQTYCQV
IHRAFSEAKGQEFHHMGWNTCSSRHCCQNTKRNKLILPCLNSDAIYVFDVEYNLKKPKIH
KVNYGEMLRSHDVSAPHTVHCLPSGNLMISTLGDKDGNAKGDFILLDKNFDVIGTWSKDK
KALCGYDFWYQPYFDVLIGTEWGAPKLFRKEFSISAMQSTRDFGQRLNVYSYNDGTLLDT
IDLGM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g1421.t2 | PANTHER | PTHR23300 | METHANETHIOL OXIDASE | 7 | 243 | 0 |
| 1 | g1421.t2 | Pfam | PF05694 | 56kDa selenium binding protein (SBP56) | 7 | 244 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008430 | selenium binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed