General information for g14215.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transcription factor glial cells missing.
Parent gene
- The parent gene g14215 is located on chr_1: 35467263..35468474 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14215 | g14215.t1 | TSS | g14215.t1 | 35467153 | 35467153 |
| chr_1 | g14215 | g14215.t1 | isoform | g14215.t1 | 35467263 | 35468474 |
| chr_1 | g14215 | g14215.t1 | exon | g14215.t1.exon1 | 35467263 | 35468474 |
| chr_1 | g14215 | g14215.t1 | cds | g14215.t1.CDS1 | 35467263 | 35468474 |
| chr_1 | g14215 | g14215.t1 | TTS | g14215.t1 | 35468834 | 35468834 |
Sequences
>g14215.t1 Gene=g14215 Length=1212
ATGTTACGTGATTGGGATATTAATGACAATGTTGTGCCAGCTATAAGTGAAGCTGAATTG
GATGAATATCAAGAATGGGCCGATGGACATTGTCGATATGTTTATAATCCAAATAGTGAG
GAAGCCAAAAAACATTCTTCAGGTTGGGCTATGAGAAATACAAATAATCATAATGTGAAT
ATTCTCAAAAAAAGTTGTTTGGGTGTTCTTGTTTGTTCTGTTGGTTGTACATTGCCGAAT
GGTGCAAAAATTAATTTACGACCAGCTATTTGTGACAAGGCGAGAAGAAAGCAGACTGGA
AAACCATGTCCAAATAGAAATTGTAATGGAAGGCTTGATATTCAACCATGCAGAGGACAT
TGCGGTTATCCTGTCACTCACTTTTGGCGTCATACAAAATATGGAATTTTCTTTCAAGCA
AAAGGTGTGCATGATCATCCAAAACCAGAACCAAAGAACTGCCGTGAAACTCGTCGCTAT
TTAGGCATGGGAAAACGAAAGAATCTTGCATTGATGCTTACAAGAGATGCAGCATTAAGT
AAAAAATTAAAGACGCTACAGAATAAGACCAATTACAATAATGAAATGATAAATTGCCAA
CAACAAACTTCCATAGAAATGACTGAAACATATTCACCAACTTATACACAAATGAATTAT
CAAGAATATGCACAACAGCAACAATTTACAAATATCGATTTTTCAGGCAATGAATTTATA
AATGCTGAAGAAATTTTCCAACTCGATCAACCAATTAAACAGTACAATAACAGCAATAAT
ATGCAAGTATTTTCAAAATCACCATCAACTGTGCTAGATTTGGATAAAAATTATCTCGTG
AAAAATGAGATGACGATTGGAACATTTTCGGAAGTGGACGATACAATGAGTTTAACAAGC
GGTTCAAGCGTGAGTCTCTTTGATGATGCATATCAGTTTGCAAACAATGGTTATGTGACA
AACAACTACAATTCTCATGAACTTAACAATAATTATTATGGAAAGCAAAATTATAGTGAA
GACTCATCAATTTATGACACAAGAAATTTCAATACCTCGCCAATCGATCAAGTAAATTAT
GATTATTCAATGATTGATCAGCAAACATCGTATTTTAATGAATATAATCGAAATAATAAT
ATTAATGGATATATCAACTATTCTGATGATGTTGTTCCATATGTGCCGCAGTTTGAACAG
TGTGCATTTTAA
>g14215.t1 Gene=g14215 Length=403
MLRDWDINDNVVPAISEAELDEYQEWADGHCRYVYNPNSEEAKKHSSGWAMRNTNNHNVN
ILKKSCLGVLVCSVGCTLPNGAKINLRPAICDKARRKQTGKPCPNRNCNGRLDIQPCRGH
CGYPVTHFWRHTKYGIFFQAKGVHDHPKPEPKNCRETRRYLGMGKRKNLALMLTRDAALS
KKLKTLQNKTNYNNEMINCQQQTSIEMTETYSPTYTQMNYQEYAQQQQFTNIDFSGNEFI
NAEEIFQLDQPIKQYNNSNNMQVFSKSPSTVLDLDKNYLVKNEMTIGTFSEVDDTMSLTS
GSSVSLFDDAYQFANNGYVTNNYNSHELNNNYYGKQNYSEDSSIYDTRNFNTSPIDQVNY
DYSMIDQQTSYFNEYNRNNNINGYINYSDDVVPYVPQFEQCAF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14215.t1 | Gene3D | G3DSA:3.30.1370.90 | - | 34 | 149 | 0.00 |
| 5 | g14215.t1 | Gene3D | G3DSA:2.20.28.80 | - | 69 | 159 | 0.00 |
| 2 | g14215.t1 | PANTHER | PTHR12414 | GLIAL CELLS MISSING RELATED/GLIDE | 3 | 203 | 0.00 |
| 3 | g14215.t1 | PANTHER | PTHR12414:SF8 | TRANSCRIPTION FACTOR GLIAL CELLS MISSING-RELATED | 3 | 203 | 0.00 |
| 1 | g14215.t1 | Pfam | PF03615 | GCM motif protein | 21 | 159 | 0.00 |
| 7 | g14215.t1 | ProSiteProfiles | PS50807 | GCM domain profile. | 3 | 161 | 62.66 |
| 4 | g14215.t1 | SUPERFAMILY | SSF90073 | GCM domain | 4 | 161 | 0.00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | MF |
| GO:0006355 | regulation of transcription, DNA-templated | BP |
KEGG
Orthology
- This transcript has been annotated with K21598 (chorion-specific transcription factor GCM)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
