Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Alanine aminotransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14219 g14219.t10 TSS g14219.t10 35491029 35491029
chr_1 g14219 g14219.t10 isoform g14219.t10 35491147 35494697
chr_1 g14219 g14219.t10 exon g14219.t10.exon1 35491147 35491152
chr_1 g14219 g14219.t10 exon g14219.t10.exon2 35491812 35492043
chr_1 g14219 g14219.t10 exon g14219.t10.exon3 35492103 35492155
chr_1 g14219 g14219.t10 exon g14219.t10.exon4 35492609 35492704
chr_1 g14219 g14219.t10 exon g14219.t10.exon5 35493918 35494047
chr_1 g14219 g14219.t10 exon g14219.t10.exon6 35494107 35494448
chr_1 g14219 g14219.t10 cds g14219.t10.CDS1 35494268 35494448
chr_1 g14219 g14219.t10 exon g14219.t10.exon7 35494515 35494697
chr_1 g14219 g14219.t10 cds g14219.t10.CDS2 35494515 35494696
chr_1 g14219 g14219.t10 TTS g14219.t10 NA NA

Sequences

>g14219.t10 Gene=g14219 Length=1042
AGAAAAAGAGCTGTTTAACTATGGCAACCCTCACTTCATTCATTTCTCATTCACTTCGTT
CAACAAAACATTTTAGTCGTATTATACACCGGTCGTCGTATAAGTCCGTTTTAAGCTATC
ATCTAAATAATTCTGAAAATTTTTGGTCATCATCACCAAGAGAAATGTCGACTTTAGGAA
AATGTCTTTCTATTGATAACATCAATCCATGCATAAAAACTATGGAATATGCTGTGAGAG
GACCTCTCGTAATTCGTGCGGCAGCTATTGAAAAAGAATTGGAGCAGGTTAGGCGTTAAG
AAGCCATTTAATGAAGTCATACGAGCAAATATTGGCGATTGCCATGCTATGGTATGTTTA
CGCAACTAATAATTACAATGCATTGCAGTACTTGGTCTGTGCGTTTATGAGAAACTTTTT
GATGATCCAACAATTCCCTCGGATGCTAAACAACGTGCACGCGACATCTTGAATGGTTGC
AAAGGTGGCTCATTGGGCTCTTATTCAGACTCGACTGGTATCGAAGTCATAAGAAGACAT
TGTGCTGAGTACATTCATAAACGTGATGGAATCCCATCGAATGCTGACGACATTATTTTG
TCAGCTGGTGCTTCTGGCAGCATTAAAGCAATTCTTGCACTTCTTCGCTGTGATATTGAT
GGAAAAAGACCAGGTGTAATGGTACCTATTCCACAATATCCATTATATTCTGCTACAATC
GCAGAATTTGACATGCAACAAATTGGATATTACTTAGATGAATCAAACAATTGGGGATTA
GATATTGCTGAATTGCAAAGATCGATTGATGAGGCAAAGAAAAATTCATATCCACGTGCA
ATTGTTATTATTAATCCTGGTAATCCAACTGGACAAGTTTTAACGAAAGAAAATATTGAA
GCAGTAATCAAATTTGCTCACAAAGAAAATCTCTTTATTTTTGCTGATGAAGTATATCAA
GATAATATCTATGCACCTGATTCAAAATTTTTTTCATTCAAAAAAGTTTTAACTGAAATG
GGAGAGCCATATTCAAAAATGG

>g14219.t10 Gene=g14219 Length=121
MVPIPQYPLYSATIAEFDMQQIGYYLDESNNWGLDIAELQRSIDEAKKNSYPRAIVIINP
GNPTGQVLTKENIEAVIKFAHKENLFIFADEVYQDNIYAPDSKFFSFKKVLTEMGEPYSK
M

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g14219.t10 Gene3D G3DSA:3.40.640.10 - 1 121 0
2 g14219.t10 PANTHER PTHR11751 ALANINE AMINOTRANSFERASE 1 120 0
1 g14219.t10 Pfam PF00155 Aminotransferase class I and II 2 101 0
3 g14219.t10 SUPERFAMILY SSF53383 PLP-dependent transferases 2 114 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009058 biosynthetic process BP
GO:0003824 catalytic activity MF
GO:0030170 pyridoxal phosphate binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed