General information for g14219.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alanine aminotransferase 1.
Parent gene
- The parent gene g14219 is located on chr_1: 35491970..35501657 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14219 | g14219.t4 | isoform | g14219.t4 | 35490780 | 35495087 |
| chr_1 | g14219 | g14219.t4 | exon | g14219.t4.exon1 | 35490780 | 35491152 |
| chr_1 | g14219 | g14219.t4 | exon | g14219.t4.exon2 | 35491812 | 35492043 |
| chr_1 | g14219 | g14219.t4 | exon | g14219.t4.exon3 | 35492103 | 35492155 |
| chr_1 | g14219 | g14219.t4 | exon | g14219.t4.exon4 | 35492609 | 35492668 |
| chr_1 | g14219 | g14219.t4 | cds | g14219.t4.CDS1 | 35492666 | 35492668 |
| chr_1 | g14219 | g14219.t4 | exon | g14219.t4.exon5 | 35492737 | 35492766 |
| chr_1 | g14219 | g14219.t4 | cds | g14219.t4.CDS2 | 35492737 | 35492766 |
| chr_1 | g14219 | g14219.t4 | exon | g14219.t4.exon6 | 35493918 | 35494047 |
| chr_1 | g14219 | g14219.t4 | cds | g14219.t4.CDS3 | 35493918 | 35494047 |
| chr_1 | g14219 | g14219.t4 | exon | g14219.t4.exon7 | 35494107 | 35494448 |
| chr_1 | g14219 | g14219.t4 | cds | g14219.t4.CDS4 | 35494107 | 35494448 |
| chr_1 | g14219 | g14219.t4 | exon | g14219.t4.exon8 | 35494515 | 35494727 |
| chr_1 | g14219 | g14219.t4 | cds | g14219.t4.CDS5 | 35494515 | 35494727 |
| chr_1 | g14219 | g14219.t4 | exon | g14219.t4.exon9 | 35494791 | 35495087 |
| chr_1 | g14219 | g14219.t4 | cds | g14219.t4.CDS6 | 35494791 | 35495086 |
| chr_1 | g14219 | g14219.t4 | TSS | g14219.t4 | NA | NA |
| chr_1 | g14219 | g14219.t4 | TTS | g14219.t4 | NA | NA |
Sequences
>g14219.t4 Gene=g14219 Length=1730
AAGGTGTGATTTCGTTCATAATTTACTTTTAAGGAGTAAATGTTTCAATTTCATTTTTGT
TTCAATATTATTTTGATTTCCATTTTCATATCAATTCTTTTTGTGTGTAAAAAATTCATT
GTAGTCTCGTCTCGTCTCTTTTCTAGACTCTCTCGCGTAAAAAGAAAAGTAAATATATTT
TCGGAATCAAAATAAAATCAAGTGTATTTGGCCAGTGTGTGTAGGAAAATATATATCTAG
ATTTTTCACCAGTTGATTATTTTCATTCGGTGCTAATAGATCTCGACGAAAAAATTCTTT
AGAATTACTGGATCATAATTGAATTGAAAAATATTGAATAATCTTGATAGCAATCGTTCT
CATTAAAAGAAAAAGAGCTGTTTAACTATGGCAACCCTCACTTCATTCATTTCTCATTCA
CTTCGTTCAACAAAACATTTTAGTCGTATTATACACCGGTCGTCGTATAAGTCCGTTTTA
AGCTATCATCTAAATAATTCTGAAAATTTTTGGTCATCATCACCAAGAGAAATGTCGACT
TTAGGAAAATGTCTTTCTATTGATAACATCAATCCATGCATAAAAACTATGGAATATGCT
GTGAGAGGACCTCTCGTAATTCGTGCGGCAGCTATTGAAAAAGAATTGGAGCAGGTTAGG
CGTTAAGAAGCCATTTAATGAAGTCATACGAGCAAATATTGGCGATTGCCATGCTATGGG
TCAAATTCCCATTACTTTTATTCGTCAAGTACTTGGTCTGTGCGTTTATGAGAAACTTTT
TGATGATCCAACAATTCCCTCGGATGCTAAACAACGTGCACGCGACATCTTGAATGGTTG
CAAAGGTGGCTCATTGGGCTCTTATTCAGACTCGACTGGTATCGAAGTCATAAGAAGACA
TTGTGCTGAGTACATTCATAAACGTGATGGAATCCCATCGAATGCTGACGACATTATTTT
GTCAGCTGGTGCTTCTGGCAGCATTAAAGCAATTCTTGCACTTCTTCGCTGTGATATTGA
TGGAAAAAGACCAGGTGTAATGGTACCTATTCCACAATATCCATTATATTCTGCTACAAT
CGCAGAATTTGACATGCAACAAATTGGATATTACTTAGATGAATCAAACAATTGGGGATT
AGATATTGCTGAATTGCAAAGATCGATTGATGAGGCAAAGAAAAATTCATATCCACGTGC
AATTGTTATTATTAATCCTGGTAATCCAACTGGACAAGTTTTAACGAAAGAAAATATTGA
AGCAGTAATCAAATTTGCTCACAAAGAAAATCTCTTTATTTTTGCTGATGAAGTATATCA
AGATAATATCTATGCACCTGATTCAAAATTTTTTTCATTCAAAAAAGTTTTAACTGAAAT
GGGAGAGCCATATTCAAAAATGGCTATGGGAAGTTTTATGAGTTGCTCCAAAGGCTATAT
GGGTGAATGTGGAATTAGAGGTGGCTATTGTGAACTCATTAATGTTTGTCCTGAAGTAAG
AGCAGCTCTCAACAAAAGCATATCAGCACAATTGTGCCCTACAACCGTTGGTCAAGCTTG
TATTGATTGTGTTGTAAATCCACCTACTCCATTTGAGCCATCCTATGATCTTTTTATGAA
AGAAAAGGGAGAAGTGCTTCAGTCACTTAAAGAGCGTGCATTGTTGGTTGTTTCAACTTT
TAATTCAATTGAGGGCTTAAGTTGTAACCCCGCACAAGGCGCAATGTATT
>g14219.t4 Gene=g14219 Length=338
MGQIPITFIRQVLGLCVYEKLFDDPTIPSDAKQRARDILNGCKGGSLGSYSDSTGIEVIR
RHCAEYIHKRDGIPSNADDIILSAGASGSIKAILALLRCDIDGKRPGVMVPIPQYPLYSA
TIAEFDMQQIGYYLDESNNWGLDIAELQRSIDEAKKNSYPRAIVIINPGNPTGQVLTKEN
IEAVIKFAHKENLFIFADEVYQDNIYAPDSKFFSFKKVLTEMGEPYSKMAMGSFMSCSKG
YMGECGIRGGYCELINVCPEVRAALNKSISAQLCPTTVGQACIDCVVNPPTPFEPSYDLF
MKEKGEVLQSLKERALLVVSTFNSIEGLSCNPAQGAMY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14219.t4 | CDD | cd00609 | AAT_like | 22 | 338 | 0 |
| 4 | g14219.t4 | Gene3D | G3DSA:3.40.640.10 | - | 48 | 296 | 0 |
| 2 | g14219.t4 | PANTHER | PTHR11751 | ALANINE AMINOTRANSFERASE | 1 | 338 | 0 |
| 1 | g14219.t4 | Pfam | PF00155 | Aminotransferase class I and II | 11 | 338 | 0 |
| 3 | g14219.t4 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 17 | 338 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0009058 | biosynthetic process | BP |
| GO:0003824 | catalytic activity | MF |
| GO:0030170 | pyridoxal phosphate binding | MF |
KEGG
Orthology
- This transcript has been annotated with K14260 (alanine-synthesizing transaminase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed