General information for g14246.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATP-binding cassette sub-family D member 3.
Parent gene
- The parent gene g14246 is located on chr_1: 35831289..35832141 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14246 | g14246.t1 | isoform | g14246.t1 | 35831289 | 35831678 |
| chr_1 | g14246 | g14246.t1 | exon | g14246.t1.exon1 | 35831289 | 35831678 |
| chr_1 | g14246 | g14246.t1 | cds | g14246.t1.CDS1 | 35831289 | 35831678 |
| chr_1 | g14246 | g14246.t1 | TTS | g14246.t1 | 35832003 | 35832003 |
| chr_1 | g14246 | g14246.t1 | TSS | g14246.t1 | NA | NA |
Sequences
>g14246.t1 Gene=g14246 Length=390
ATGAAGAGACGAGGCAAGACAGATCAGGACTTGTTTAAATTCTTAGATATTGTGCAATTA
AGATCATTAGTGCAACAACGTGAAAAAGGACTTGATTCTATTGAAGATTGGATTGATGTA
CTAAGTGGTGGTGAAAAGCAAAGAATTGCCATGGCTAGATTATTTTACCATCATCCTCAA
TTTGCAATTCTTGATGAATGCACTAGTGCAGTGTCAGTTGATGTAGAAGGATCAATGTAT
GAATATTGTCGTCAAGTTAATATAACTCTCTTCACCGTTTCACATCGTAAATCACTATGG
ACTCATCACGAATACGTTTTGAGATTTGATGGACGAGGAGCATATGAATTTGGAAAAATT
GATGGCTCAAATGAGGAATTTGGCTCATAA
>g14246.t1 Gene=g14246 Length=129
MKRRGKTDQDLFKFLDIVQLRSLVQQREKGLDSIEDWIDVLSGGEKQRIAMARLFYHHPQ
FAILDECTSAVSVDVEGSMYEYCRQVNITLFTVSHRKSLWTHHEYVLRFDGRGAYEFGKI
DGSNEEFGS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14246.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 126 | 0e+00 |
| 2 | g14246.t1 | PANTHER | PTHR11384 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER | 1 | 126 | 0e+00 |
| 3 | g14246.t1 | PANTHER | PTHR11384:SF13 | PEROXISOMAL MEMBRANE PROTEIN RELATED | 1 | 126 | 0e+00 |
| 1 | g14246.t1 | Pfam | PF00005 | ABC transporter | 28 | 69 | 2e-07 |
| 4 | g14246.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 24 | 123 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
