General information for g14251.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-binding cassette sub-family D member.
Parent gene
- The parent gene g14251 is located on chr_1: 35856487..35857276 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14251 | g14251.t3 | isoform | g14251.t3 | 35856065 | 35856797 |
| chr_1 | g14251 | g14251.t3 | exon | g14251.t3.exon1 | 35856065 | 35856406 |
| chr_1 | g14251 | g14251.t3 | cds | g14251.t3.CDS1 | 35856079 | 35856406 |
| chr_1 | g14251 | g14251.t3 | exon | g14251.t3.exon2 | 35856468 | 35856724 |
| chr_1 | g14251 | g14251.t3 | cds | g14251.t3.CDS2 | 35856468 | 35856724 |
| chr_1 | g14251 | g14251.t3 | exon | g14251.t3.exon3 | 35856788 | 35856797 |
| chr_1 | g14251 | g14251.t3 | cds | g14251.t3.CDS3 | 35856788 | 35856796 |
| chr_1 | g14251 | g14251.t3 | TTS | g14251.t3 | 35857466 | 35857466 |
| chr_1 | g14251 | g14251.t3 | TSS | g14251.t3 | NA | NA |
Sequences
>g14251.t3 Gene=g14251 Length=609
GGTCCGGTACAGGCATGATTATGGTATCACTACCAATTTTAACTACAAGCCATTTGAGTA
GTGATGAAGATCAAAAGAGCAACACAGGAAGTAAAGTTAGTCAACGTACTGAATATTTTA
CAACTGCTAGTAACTTACTTAAATCTGGTGCTGATGCTGTTGAGAGACTTATGTCTAGTT
ATAAAGAAATTGTAGAACTGGCAGGCTATACAAGTCGTGTTTCAGAAATGTTTCAAGTCT
TTGAAGAAGTATCACAGGGTATTTATAAAAAGACAACAGTTGATGATGAAACAGCTACAG
AAGGAATACTTGAATTTAAAAATGGTCAACCAGTTGCTAATGGCAAAATATTTTATGATA
CAGAAAATATGTCTATAACACTTAAAAATGTTCCAGTTGTGACTCCAAATTGCGATATTG
TTGTTCCAAATTTAACATTAACAATCAGACCTGGCATGCATTTACTTATAACTGGGCCAA
ATGGCTGTGGAAAATCGAGTTTATTCCGAATTTTAAGTGGTCTTTGGCCTATTTATAATG
GAGAGCTTCATTTGCCAAAAACATGTGAGGATAAACCATGCATGTTCTACATTCCACAAC
GACCATACA
>g14251.t3 Gene=g14251 Length=198
MIMVSLPILTTSHLSSDEDQKSNTGSKVSQRTEYFTTASNLLKSGADAVERLMSSYKEIV
ELAGYTSRVSEMFQVFEEVSQGIYKKTTVDDETATEGILEFKNGQPVANGKIFYDTENMS
ITLKNVPVVTPNCDIVVPNLTLTIRPGMHLLITGPNGCGKSSLFRILSGLWPIYNGELHL
PKTCEDKPCMFYIPQRPY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14251.t3 | Gene3D | G3DSA:3.40.50.300 | - | 111 | 198 | 2.1E-14 |
| 2 | g14251.t3 | PANTHER | PTHR11384 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER | 1 | 198 | 1.6E-64 |
| 3 | g14251.t3 | PANTHER | PTHR11384:SF13 | PEROXISOMAL MEMBRANE PROTEIN RELATED | 1 | 198 | 1.6E-64 |
| 1 | g14251.t3 | Pfam | PF00005 | ABC transporter | 139 | 181 | 7.6E-9 |
| 7 | g14251.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 16 | - |
| 8 | g14251.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 9 | g14251.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 11 | - |
| 10 | g14251.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 12 | 16 | - |
| 6 | g14251.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 17 | 198 | - |
| 4 | g14251.t3 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 109 | 182 | 1.47E-14 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed