General information for g14283.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as b 0,+-type amino acid transporter 1.
Parent gene
- The parent gene g14283 is located on chr_1: 36303250..36308157 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14283 | g14283.t1 | isoform | g14283.t1 | 36301733 | 36303731 |
| chr_1 | g14283 | g14283.t1 | exon | g14283.t1.exon1 | 36301733 | 36301736 |
| chr_1 | g14283 | g14283.t1 | cds | g14283.t1.CDS1 | 36301733 | 36301736 |
| chr_1 | g14283 | g14283.t1 | exon | g14283.t1.exon2 | 36301807 | 36302280 |
| chr_1 | g14283 | g14283.t1 | cds | g14283.t1.CDS2 | 36301807 | 36302280 |
| chr_1 | g14283 | g14283.t1 | exon | g14283.t1.exon3 | 36302475 | 36302685 |
| chr_1 | g14283 | g14283.t1 | cds | g14283.t1.CDS3 | 36302475 | 36302685 |
| chr_1 | g14283 | g14283.t1 | exon | g14283.t1.exon4 | 36302747 | 36302784 |
| chr_1 | g14283 | g14283.t1 | cds | g14283.t1.CDS4 | 36302747 | 36302784 |
| chr_1 | g14283 | g14283.t1 | exon | g14283.t1.exon5 | 36302858 | 36302879 |
| chr_1 | g14283 | g14283.t1 | cds | g14283.t1.CDS5 | 36302858 | 36302879 |
| chr_1 | g14283 | g14283.t1 | exon | g14283.t1.exon6 | 36302936 | 36303186 |
| chr_1 | g14283 | g14283.t1 | cds | g14283.t1.CDS6 | 36302936 | 36303186 |
| chr_1 | g14283 | g14283.t1 | exon | g14283.t1.exon7 | 36303250 | 36303731 |
| chr_1 | g14283 | g14283.t1 | cds | g14283.t1.CDS7 | 36303250 | 36303731 |
| chr_1 | g14283 | g14283.t1 | TTS | g14283.t1 | 36303841 | 36303841 |
| chr_1 | g14283 | g14283.t1 | TSS | g14283.t1 | NA | NA |
Sequences
>g14283.t1 Gene=g14283 Length=1482
ATGGGAACAGAAGAAAGAAATGTGGGATTGAGGAGAGAGATGGGGCTGATTGCTGCTGTG
AATGTCATCTTAAATGTCATGATAGGAAGTGGGATTTTCATATCACCACAAGACGCATTG
AAATATTCTGGTTCTATTGGCGCTTGTTTGATTGTTTGGTTAATATGCGGAATAATCTCA
TTAGTAGGTGCTTTATGCTTCGCTGAATTAGGAAGTGTTGTACCGAAATCCGGAGCCGAA
TATGCCTACTTAATGGAAGCATTTGGAAGAAATAGAAAAAGTAGATTTCTTGGGCCATTA
CCAGCATTTGTTTGTGCATGGATATATGTAATGATATTGAGACCTGCTGAAATAGCAATT
ATCCTTCTAACATTCTCTGAATACTCTATTCAACCTTTTGATTCATTACTTGGACTTTCA
AATTTGTCACCTGAATCTAATTCAAATTTAATCAAAATTGTTGCATTTTTAACATTAGGA
ATAATCACATACATTAATATTTCAAGTGTGAAGCTTTATGTCAAATTAAATAATATTTTT
GGTGCTGCAAAAGTATTCGCATGTTTTGTCGTGATATTTGGAGGCCTTTATCAATTGGCG
ATGGGAAACACTGAAAATTTAAAGTCAGGTTTTACTGGAACAAATTTAAAATTTGGTGCT
GTTGCTTTAGCTTTTTACAATGGTCTATGGTCTTTTGATGGATGGTCTAGTGTAACAACT
ATCACAGAAGAGATTAAAAGCCCACAAAAAAACATACCAAGATCAATATTGATCGCTGTG
CCTCTTGTTACCCTTCTTTATGTGTTCATGAATGTGTCTTATATGATTGTACTCGATAAA
TATGAAATGATTAATGCTGTAGCTGTTGGAATCTCATTTGCTGAAAAAGCTTTAGGACCA
TTTGCATTTCTAATTCCATTAGGTGTTGCTTTATCAACTTTTGGTTGTGCCTTATCAATT
CAATTTGGTGTCACAAGATTATGTTTTGTTGCGGGAAGAGAAGGACATATGTTAGAACCA
TTATCTTATATACATGTTACAAAATCAACACCATCTCCTGCGGTGTTTCTTCAAGGAATT
TTATCAATTATTTTTCTTACTGTTGGTGACATTTCCGCATTAATTGAATTTGCATCATTT
TTAATTTGGTTTTTCTACGGAGCCGCGTGTGTATGCTTGCTTGTAATGAGAAGAACTCAT
GCTCATGTTGAACGTTCATATAAAGTTCCTATTTTGTTGCCAATAATTACGTTAATTGTA
TCAGTATTCCTTGTAATAACTCCTCTAATAGATAATCCAAGTTTAAAATATTTAAGCGCT
TTGGGTTTCATTTTTAGTGGCATTTTGGTTTATGCACCATTTGTCTATTATAAAAAGAGA
CCACAATTTATGGACTCAATTACTCATTACATTCAATTGTTTTTTATGGTTGTGCCATCA
ACTAGCGAAATTGAGGAGAATAACAATGAAAAATTACATTAA
>g14283.t1 Gene=g14283 Length=493
MGTEERNVGLRREMGLIAAVNVILNVMIGSGIFISPQDALKYSGSIGACLIVWLICGIIS
LVGALCFAELGSVVPKSGAEYAYLMEAFGRNRKSRFLGPLPAFVCAWIYVMILRPAEIAI
ILLTFSEYSIQPFDSLLGLSNLSPESNSNLIKIVAFLTLGIITYINISSVKLYVKLNNIF
GAAKVFACFVVIFGGLYQLAMGNTENLKSGFTGTNLKFGAVALAFYNGLWSFDGWSSVTT
ITEEIKSPQKNIPRSILIAVPLVTLLYVFMNVSYMIVLDKYEMINAVAVGISFAEKALGP
FAFLIPLGVALSTFGCALSIQFGVTRLCFVAGREGHMLEPLSYIHVTKSTPSPAVFLQGI
LSIIFLTVGDISALIEFASFLIWFFYGAACVCLLVMRRTHAHVERSYKVPILLPIITLIV
SVFLVITPLIDNPSLKYLSALGFIFSGILVYAPFVYYKKRPQFMDSITHYIQLFFMVVPS
TSEIEENNNEKLH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g14283.t1 | Gene3D | G3DSA:1.20.1740.10 | - | 10 | 475 | 6.7E-88 |
| 2 | g14283.t1 | PANTHER | PTHR11785:SF514 | B(0,+)-TYPE AMINO ACID TRANSPORTER 1-LIKE PROTEIN | 6 | 483 | 9.9E-225 |
| 3 | g14283.t1 | PANTHER | PTHR11785 | AMINO ACID TRANSPORTER | 6 | 483 | 9.9E-225 |
| 42 | g14283.t1 | PIRSF | PIRSF006060 | AA_transporter | 1 | 470 | 2.9E-76 |
| 1 | g14283.t1 | Pfam | PF13520 | Amino acid permease | 15 | 439 | 2.2E-52 |
| 21 | g14283.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 15 | - |
| 34 | g14283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 16 | 36 | - |
| 25 | g14283.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 37 | 41 | - |
| 41 | g14283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 42 | 67 | - |
| 19 | g14283.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 68 | 99 | - |
| 31 | g14283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 100 | 130 | - |
| 27 | g14283.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 131 | 149 | - |
| 35 | g14283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 150 | 167 | - |
| 23 | g14283.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 168 | 178 | - |
| 30 | g14283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 179 | 198 | - |
| 29 | g14283.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 199 | 217 | - |
| 40 | g14283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 218 | 235 | - |
| 17 | g14283.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 236 | 255 | - |
| 33 | g14283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 256 | 277 | - |
| 28 | g14283.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 278 | 296 | - |
| 38 | g14283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 297 | 320 | - |
| 20 | g14283.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 321 | 353 | - |
| 37 | g14283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 354 | 374 | - |
| 26 | g14283.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 375 | 379 | - |
| 32 | g14283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 380 | 397 | - |
| 22 | g14283.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 398 | 408 | - |
| 36 | g14283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 409 | 430 | - |
| 24 | g14283.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 431 | 435 | - |
| 39 | g14283.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 436 | 457 | - |
| 18 | g14283.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 458 | 493 | - |
| 5 | g14283.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 13 | 35 | - |
| 10 | g14283.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 45 | 67 | - |
| 8 | g14283.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 96 | 118 | - |
| 9 | g14283.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 150 | 172 | - |
| 11 | g14283.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 179 | 201 | - |
| 14 | g14283.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 211 | 230 | - |
| 15 | g14283.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 256 | 278 | - |
| 4 | g14283.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 298 | 320 | - |
| 7 | g14283.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 352 | 369 | - |
| 13 | g14283.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 373 | 395 | - |
| 12 | g14283.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 408 | 430 | - |
| 6 | g14283.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 440 | 457 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
