Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14284 g14284.t10 isoform g14284.t10 36304352 36305722
chr_1 g14284 g14284.t10 exon g14284.t10.exon1 36304352 36305112
chr_1 g14284 g14284.t10 cds g14284.t10.CDS1 36304352 36304960
chr_1 g14284 g14284.t10 exon g14284.t10.exon2 36305168 36305722
chr_1 g14284 g14284.t10 TSS g14284.t10 NA NA
chr_1 g14284 g14284.t10 TTS g14284.t10 NA NA

Sequences

>g14284.t10 Gene=g14284 Length=1316
ATGGTAATTTTAATTAATTATTCCATAAATCAGCATAATTTTAATCAAAATACTATATAG
ATTCGAACATCTAAGTTTATTGTAGGCCTCAAGCCGCATAAACTAGCAGTAATTGGTAAT
TTTACAAGAAGCATGTCATCATCGAGTGATGTACTTGTGACTGAGCGAGGAAATGCAGGA
ATAATTACTATAAATCGGCCAAAAACATTGAATGCAATCAATACTGATATGGTCAAGTGT
GTAGATTTTCTAAAAATATCTTTATCAACTCTATTACGATATTAAAATTATAATTTATTA
TTTAAAGAACAATTTATGCAGCAATGAAAGATTTTGCATCAAAAGATGATAAGCATTTGG
TGATAATTAAGGGAGCTGGAGAAAAGTCATTTTGCGCTGGTGGTGACGTAAGAGCTGTAG
TTGAAAATGATGTTTCATTTGGAAAAGATTTCTTTAGAAATGAATACAAGAATAATGAAT
TGATAGGAAATTACAAAAAACCATATATTGCAATTATTGATGGCATCACAATGGGCGGTG
GTGTTGGTCTAAGCGTACATGGAAAATATCGAGTTGCAACAGAAAGGACATTGTTCGCGA
TGCCTGAAACAGCAATTGGTAAACTTATGCAACAATAATTTTATTTAATACATTAATTTT
GTTTAGGTCTTTTTCCTGATGTTGGTGGCGGTTATTTTTTGCCACGAATGAATGGAAACC
TCGGTATATATCTCGGGCTGACTGGATTTAGACTGAAAGGTCGTGATGTACAAAAAGCAG
GTGTGGCTACTCATTTCATTGAAAGCTCTGCACTTGAAGACTTAGAAAATCAGCTTACAA
AATGCAAGAATTTTGATGATATTGATAAAACATTGGAAAAACTTCAGTCTCAGTTTAAAG
ATACCACAGACTTTGTATTACAGCCTCATTTAAAACAAATTGAAAAGGCTTTTGGTGGTG
ATACGATGGAGCAAATTTTGAAAAATCTTCACTCTGATGGCTCTGAGTGGGCAATGTCAA
CACTTAAATTAATTAGCAAAATGAGTCCAACGAGCCTTAAAGTAACTCTTCGTCAACTTC
AACTTGGCAAATCAATGTCTTTGCGTGAGTGCCTTCAAATGGAATTTCGCTTAGCTGTTC
ATTGCTGCATCGAGAGCGATTTTAAAGAAGGTGTTCGGGCATTACTTATTGATAAAGATC
AACAACCAAAATGGAATCCCAGTAAAATCGAAGACGTGACACAAGGTCATGTTTTAAAAT
TTTTTGTCCCTCTTCCCGATAACGACGAATTGGTTTTTGATCATTCAAAATTGTAA

>g14284.t10 Gene=g14284 Length=202
MNGNLGIYLGLTGFRLKGRDVQKAGVATHFIESSALEDLENQLTKCKNFDDIDKTLEKLQ
SQFKDTTDFVLQPHLKQIEKAFGGDTMEQILKNLHSDGSEWAMSTLKLISKMSPTSLKVT
LRQLQLGKSMSLRECLQMEFRLAVHCCIESDFKEGVRALLIDKDQQPKWNPSKIEDVTQG
HVLKFFVPLPDNDELVFDHSKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g14284.t10 Gene3D G3DSA:3.90.226.40 - 1 201 0
2 g14284.t10 PANTHER PTHR43176 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 2 192 0
3 g14284.t10 PANTHER PTHR43176:SF3 3-HYDROXYISOBUTYRYL-COA HYDROLASE, MITOCHONDRIAL 2 192 0
1 g14284.t10 Pfam PF16113 Enoyl-CoA hydratase/isomerase 1 186 0
4 g14284.t10 SUPERFAMILY SSF52096 ClpP/crotonase 4 169 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed