Gene loci information

Transcript annotation

  • This transcript has been annotated as 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14284 g14284.t5 isoform g14284.t5 36304352 36305722
chr_1 g14284 g14284.t5 exon g14284.t5.exon1 36304352 36304720
chr_1 g14284 g14284.t5 cds g14284.t5.CDS1 36304707 36304720
chr_1 g14284 g14284.t5 exon g14284.t5.exon2 36304789 36305001
chr_1 g14284 g14284.t5 cds g14284.t5.CDS2 36304789 36305001
chr_1 g14284 g14284.t5 exon g14284.t5.exon3 36305050 36305112
chr_1 g14284 g14284.t5 cds g14284.t5.CDS3 36305050 36305112
chr_1 g14284 g14284.t5 exon g14284.t5.exon4 36305168 36305722
chr_1 g14284 g14284.t5 cds g14284.t5.CDS4 36305168 36305399
chr_1 g14284 g14284.t5 TSS g14284.t5 NA NA
chr_1 g14284 g14284.t5 TTS g14284.t5 NA NA

Sequences

>g14284.t5 Gene=g14284 Length=1200
ATGGTAATTTTAATTAATTATTCCATAAATCAGCATAATTTTAATCAAAATACTATATAG
ATTCGAACATCTAAGTTTATTGTAGGCCTCAAGCCGCATAAACTAGCAGTAATTGGTAAT
TTTACAAGAAGCATGTCATCATCGAGTGATGTACTTGTGACTGAGCGAGGAAATGCAGGA
ATAATTACTATAAATCGGCCAAAAACATTGAATGCAATCAATACTGATATGGTCAAGTGT
GTAGATTTTCTAAAAATATCTTTATCAACTCTATTACGATATTAAAATTATAATTTATTA
TTTAAAGAACAATTTATGCAGCAATGAAAGATTTTGCATCAAAAGATGATAAGCATTTGG
TGATAATTAAGGGAGCTGGAGAAAAGTCATTTTGCGCTGGTGGTGACGTAAGAGCTGTAG
TTGAAAATGATGTTTCATTTGGAAAAGATTTCTTTAGAAATGAATACAAGAATAATGAAT
TGATAGGAAATTACAAAAAACCATATATTGCAATTATTGATGGCATCACAATGGGCGGTG
GTGTTGGTCTAAGCGTACATGGAAAATATCGAGTTGCAACAGAAAGGACATTGTTCGCGA
TGCCTGAAACAGCAATTGGTCTTTTTCCTGATGTTGGTGGCGGTTATTTTTTGCCACGAA
TGAATGGAAACCTCGGTATATATCTCGGGCTGACTGGATTTAGACTGAAAGGTCGTGATG
TACAAAAAGCAGGTGTGGCTACTCATTTCATTGAAAGCTCTGCACTTGAAGACTTAGAAA
ATCAGCTTACAAAATGCAAGAATTTTGATGATATTGATAAAACATTGGAAAGCTTTTGGT
GGTGATACGATGGAGCAAATTTTGAAAAATCTTCACTCTGATGGCTCTGAGTGGGCAATG
TCAACACTTAAATTAATTAGCAAAATGAGTCCAACGAGCCTTAAAGTAACTCTTCGTCAA
CTTCAACTTGGCAAATCAATGTCTTTGCGTGAGTGCCTTCAAATGGAATTTCGCTTAGCT
GTTCATTGCTGCATCGAGAGCGATTTTAAAGAAGGTGTTCGGGCATTACTTATTGATAAA
GATCAACAACCAAAATGGAATCCCAGTAAAATCGAAGACGTGACACAAGGTCATGTTTTA
AAATTTTTTGTCCCTCTTCCCGATAACGACGAATTGGTTTTTGATCATTCAAAATTGTAA

>g14284.t5 Gene=g14284 Length=173
MKDFASKDDKHLVIIKGAGEKSFCAGGDVRAVVENDVSFGKDFFRNEYKNNELIGNYKKP
YIAIIDGITMGGGVGLSVHGKYRVATERTLFAMPETAIGLFPDVGGGYFLPRMNGNLGIY
LGLTGFRLKGRDVQKAGVATHFIESSALEDLENQLTKCKNFDDIDKTLESFWW

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g14284.t5 CDD cd06558 crotonase-like 1 155 0
5 g14284.t5 Gene3D G3DSA:3.90.226.10 - 1 172 0
2 g14284.t5 PANTHER PTHR43176 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 8 171 0
3 g14284.t5 PANTHER PTHR43176:SF3 3-HYDROXYISOBUTYRYL-COA HYDROLASE, MITOCHONDRIAL 8 171 0
1 g14284.t5 Pfam PF16113 Enoyl-CoA hydratase/isomerase 2 171 0
4 g14284.t5 SUPERFAMILY SSF52096 ClpP/crotonase 4 151 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed