General information for g14285.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14285 is located on chr_1: 36306543..36307607 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14285 | g14285.t15 | TSS | g14285.t15 | 36305915 | 36305915 |
| chr_1 | g14285 | g14285.t15 | isoform | g14285.t15 | 36306165 | 36306543 |
| chr_1 | g14285 | g14285.t15 | exon | g14285.t15.exon1 | 36306165 | 36306476 |
| chr_1 | g14285 | g14285.t15 | cds | g14285.t15.CDS1 | 36306165 | 36306476 |
| chr_1 | g14285 | g14285.t15 | exon | g14285.t15.exon2 | 36306531 | 36306543 |
| chr_1 | g14285 | g14285.t15 | cds | g14285.t15.CDS2 | 36306531 | 36306542 |
| chr_1 | g14285 | g14285.t15 | TTS | g14285.t15 | NA | NA |
Sequences
>g14285.t15 Gene=g14285 Length=325
GTGAAAATTATATTTGCTGGAAAAGAATTAGAAGACAACACAAGAATTAGTGAATGTGAT
TTAGGACAACAAAGTGTGCTTCATGCAGTAAAAACGAAATCACGAGTGAATATCGAATCG
AAAACGAAGAGATGTTTAGATGTAGTTTATGACGATGACAATGGAAATAATGTAATTGAT
GTGGCATCAAAACCTTTATCATCAACTCTAGTCGATTTACAATTGTGTGGAGAAGAGAGA
AGACATGTATCAGAAAAGCAAAGTGATAAAGTAAAAGCAAATTTCTTTGTACACTGTCCT
GAGTGTAAAAAGCTGTGTAAAGGAA
>g14285.t15 Gene=g14285 Length=108
VKIIFAGKELEDNTRISECDLGQQSVLHAVKTKSRVNIESKTKRCLDVVYDDDNGNNVID
VASKPLSSTLVDLQLCGEERRHVSEKQSDKVKANFFVHCPECKKLCKG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g14285.t15 | Gene3D | G3DSA:3.10.20.90 | - | 1 | 43 | 0.0000072 |
| 1 | g14285.t15 | Pfam | PF00240 | Ubiquitin family | 2 | 32 | 0.0000028 |
| 4 | g14285.t15 | ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 30 | 9.2210000 |
| 2 | g14285.t15 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 35 | 0.0000089 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
