General information for g14285.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14285 is located on chr_1: 36306543..36307607 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14285 | g14285.t3 | isoform | g14285.t3 | 36304176 | 36305946 |
| chr_1 | g14285 | g14285.t3 | exon | g14285.t3.exon1 | 36304176 | 36304999 |
| chr_1 | g14285 | g14285.t3 | cds | g14285.t3.CDS1 | 36304195 | 36304482 |
| chr_1 | g14285 | g14285.t3 | exon | g14285.t3.exon2 | 36305045 | 36305122 |
| chr_1 | g14285 | g14285.t3 | exon | g14285.t3.exon3 | 36305175 | 36305415 |
| chr_1 | g14285 | g14285.t3 | exon | g14285.t3.exon4 | 36305486 | 36305669 |
| chr_1 | g14285 | g14285.t3 | exon | g14285.t3.exon5 | 36305727 | 36305946 |
| chr_1 | g14285 | g14285.t3 | TSS | g14285.t3 | NA | NA |
| chr_1 | g14285 | g14285.t3 | TTS | g14285.t3 | NA | NA |
Sequences
>g14285.t3 Gene=g14285 Length=1547
TGTTAAGATCATCGACTTAATGTCAAAACAAAATAAATTTTTGCTTTCAGCAAAAAATAT
TTCAAAAAACTTTTATTATTCGCAATTTAGAATTAGTATAATGTTTCTCAAACATGATAA
ATGCAATAAGTATAATTTTATAAATGCAACAGGTACTTATCAACTAGTGAATATTTTTAC
AATTTTGAATGATCAAAAACCAATTCGTCGTTATCGGGAAGAGGGACAAAAAATTTTAAA
ACATGACCTTGTGTCACGTCTTCGATTTTACTGGGATTCCATTTTGGTTGTTGATCTTTA
TCAATAAGTAATGCCCGAACACCTTCTTTAAAATCGCTCTCGATGCAGCAATGAACAGCT
AAGCGAAATTCCATTTGAAGGCACTCACGCAAAGACATTGATTTGCCAAGTTGAAGTTGA
CGAAGAGTTACTTTAAGGCTCGTTGGACTCATTTTGCTAATTAATTTAAGTGTTGACATT
GCCCACTCAGAGCCATCAGAGTGAAGATTTTTCAAAATTTGCTCCATCGTATCACCACCA
AAAGCCTTTTCAATTTGTTTTAAATGAGGCTGTAATACAAAGTCTGTGGTATCTTTAAAC
TGAGACTGAAGTTTTTCCAATGTTTTATCAATATCATCAAAATTCTTGCATTTTGTAAGC
TGATTTTCTAAGTCTTCAAGTGCAGAGCTTTCAATGAAATGAGTAGCCACACCTGCTTTT
TGTACATCACGACCTTTCAGTCTAAATCCAGTCAGCCCGAGATATATACCGAGGTTTCCA
TTCATTCGTGGCAAAAAATAACCGCCACCAACATCAGGAAAAAGTTTACCAATTGCTGTT
TCAGGCATCGCGAACAATGTCCTTTCTGTTGCAACTCGATATTTTCCATGTACTACAAAT
TTACCAACACCACCGCCCATTGTGATGCCATCAATAATTGCAATATATGGTTTTTTGTAA
TTTCCTATCAATTCATTATTCTTGTATTCATTTCTAAAGAAATCTTTTCCAAATGAAACA
TCATTTTCAACTACAGCTCTTACGTCACCACCAGCGCAAAATGACTTTTCTCCAGCTCCC
TTAATTATCACCAAATGCTTATCATCTTTTGATGCAAAATCTTTCATTGCTGCATAAATT
GTTCTTGACCATATCAGTATTGATTGCATTCAATGTTTTTGGCCGATTTATAGTAATTAT
TCCTGCATTTCCTCGCTCAGTCACAAGTACATCACTCGATGATGACATGCTTCTTGTAAA
ATTACCAATTACTGCTAGTTTATGCGGCTTGAGGCCTACAATAAACTTAGATGTTCGAAT
CTATATATTTCGACTTTTTTGAAGTTATTTATTTATTTTCGGTGTGTGACTACTCTCGTT
CGCTCTTTTACGTAGTATATGTGTGATAAAAGCAGATTATTTTTAAAAATGGAGTCTATC
GTTCTATACTCTGTGTTATGCAATAAAAATATTTTAATACAGCTGATTATTGTAAACAAT
ATTTATGAGTTTTATAGTGAATTTTATTCGGGTTTGTTTAGATAAGA
>g14285.t3 Gene=g14285 Length=95
MSKQNKFLLSAKNISKNFYYSQFRISIMFLKHDKCNKYNFINATGTYQLVNIFTILNDQK
PIRRYREEGQKILKHDLVSRLRFYWDSILVVDLYQ
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed