Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14285 g14285.t4 isoform g14285.t4 36304176 36305946
chr_1 g14285 g14285.t4 exon g14285.t4.exon1 36304176 36305109
chr_1 g14285 g14285.t4 cds g14285.t4.CDS1 36304195 36304482
chr_1 g14285 g14285.t4 exon g14285.t4.exon2 36305167 36305414
chr_1 g14285 g14285.t4 exon g14285.t4.exon3 36305487 36305669
chr_1 g14285 g14285.t4 exon g14285.t4.exon4 36305727 36305946
chr_1 g14285 g14285.t4 TSS g14285.t4 NA NA
chr_1 g14285 g14285.t4 TTS g14285.t4 NA NA

Sequences

>g14285.t4 Gene=g14285 Length=1585
TGTTAAGATCATCGACTTAATGTCAAAACAAAATAAATTTTTGCTTTCAGCAAAAAATAT
TTCAAAAAACTTTTATTATTCGCAATTTAGAATTAGTATAATGTTTCTCAAACATGATAA
ATGCAATAAGTATAATTTTATAAATGCAACAGGTACTTATCAACTAGTGAATATTTTTAC
AATTTTGAATGATCAAAAACCAATTCGTCGTTATCGGGAAGAGGGACAAAAAATTTTAAA
ACATGACCTTGTGTCACGTCTTCGATTTTACTGGGATTCCATTTTGGTTGTTGATCTTTA
TCAATAAGTAATGCCCGAACACCTTCTTTAAAATCGCTCTCGATGCAGCAATGAACAGCT
AAGCGAAATTCCATTTGAAGGCACTCACGCAAAGACATTGATTTGCCAAGTTGAAGTTGA
CGAAGAGTTACTTTAAGGCTCGTTGGACTCATTTTGCTAATTAATTTAAGTGTTGACATT
GCCCACTCAGAGCCATCAGAGTGAAGATTTTTCAAAATTTGCTCCATCGTATCACCACCA
AAAGCCTTTTCAATTTGTTTTAAATGAGGCTGTAATACAAAGTCTGTGGTATCTTTAAAC
TGAGACTGAAGTTTTTCCAATGTTTTATCAATATCATCAAAATTCTTGCATTTTGTAAGC
TGATTTTCTAAGTCTTCAAGTGCAGAGCTTTCAATGAAATGAGTAGCCACACCTGCTTTT
TGTACATCACGACCTTTCAGTCTAAATCCAGTCAGCCCGAGATATATACCGAGGTTTCCA
TTCATTCGTGGCAAAAAATAACCGCCACCAACATCAGGAAAAAGACCTAAACAAAATTAA
TGTATTAAATAAAATTATTGTTGCATAAGTTTACCAATTGCTGTTTCAGGCATCGCGAAC
AATGTCCTTTCTGTTGCAACTCGATATTTTCCATCCGCTTAGACCAACACCACCGCCCAT
TGTGATGCCATCAATAATTGCAATATATGGTTTTTTGTAATTTCCTATCAATTCATTATT
CTTGTATTCATTTCTAAAGAAATCTTTTCCAAATGAAACATCATTTTCAACTACAGCTCT
TACGTCACCACCAGCGCAAAATGACTTTTCTCCAGCTCCCTTAATTATCACCAAATGCTT
ATCATCTTTTGATGCAAAATCTTTCATTGCTGCATAAATTGTTTGACCATATCAGTATTG
ATTGCATTCAATGTTTTTGGCCGATTTATAGTAATTATTCCTGCATTTCCTCGCTCAGTC
ACAAGTACATCACTCGATGATGACATGCTTCTTGTAAAATTACCAATTACTGCTAGTTTA
TGCGGCTTGAGGCCTACAATAAACTTAGATGTTCGAATCTATATATTTCGACTTTTTTGA
AGTTATTTATTTATTTTCGGTGTGTGACTACTCTCGTTCGCTCTTTTACGTAGTATATGT
GTGATAAAAGCAGATTATTTTTAAAAATGGAGTCTATCGTTCTATACTCTGTGTTATGCA
ATAAAAATATTTTAATACAGCTGATTATTGTAAACAATATTTATGAGTTTTATAGTGAAT
TTTATTCGGGTTTGTTTAGATAAGA

>g14285.t4 Gene=g14285 Length=95
MSKQNKFLLSAKNISKNFYYSQFRISIMFLKHDKCNKYNFINATGTYQLVNIFTILNDQK
PIRRYREEGQKILKHDLVSRLRFYWDSILVVDLYQ

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed