General information for g14309.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin-5C.
Parent gene
- The parent gene g14309 is located on chr_1: 36552428..36555404 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14309 | g14309.t10 | isoform | g14309.t10 | 36551599 | 36554119 |
| chr_1 | g14309 | g14309.t10 | exon | g14309.t10.exon1 | 36551599 | 36553070 |
| chr_1 | g14309 | g14309.t10 | TTS | g14309.t10 | 36551615 | 36551615 |
| chr_1 | g14309 | g14309.t10 | cds | g14309.t10.CDS1 | 36551932 | 36553062 |
| chr_1 | g14309 | g14309.t10 | exon | g14309.t10.exon2 | 36553972 | 36554119 |
| chr_1 | g14309 | g14309.t10 | TSS | g14309.t10 | 36554119 | 36554119 |
Sequences
>g14309.t10 Gene=g14309 Length=1620
ACTTTGAATTGAGTTGTTGAAGAGTTTAGACGTTTTCTGTGAACGGTCTTTTGAATCATT
TTTTCCAATAAAAAATTAATTAAATCAATAGTGCTGTGTTTTAAAATTGCCGTAAAAGCA
TTCTCAAATCACCAATACTTTCTTTATTAAATCAAAATGTGTGACGAAGAAGTTGCTGCA
TTGGTCGTTGACAATGGATCAGGAATGTGCAAAGCCGGTTTTGCTGGTGATGATGCACCA
CGTGCCGTTTTCCCATCAATTGTCGGTCGTCCACGTCATCAAGGCGTTATGGTCGGTATG
GGACAAAAGGACTCATATGTTGGTGATGAGGCTCAAAGCAAAAGAGGTATTCTTACCTTG
AAATATCCAATTGAACACGGTATTGTTACAAACTGGGATGATATGGAAAAGATCTGGCAT
CATACTTTCTACAATGAACTCCGTGTTGCACCTGAAGAACATCCAGTCTTGCTTACCGAA
GCTCCATTAAATCCAAAAGCAAATCGTGAAAAGATGACACAAATTATGTTCGAGACATTC
AACACACCAGCTATGTATGTTGCAATTCAAGCTGTCCTCTCATTGTATGCCTCAGGTCGT
ACAACTGGTATTGTTTTGGATTCTGGTGATGGTGTTTCACACACAGTTCCAATTTACGAA
GGTTATGCTTTGCCACATGCTATCCTTCGTCTTGATTTGGCCGGTCGTGATTTGACAGAT
TATTTGATGAAAATCTTAACCGAACGTGGATACTCATTCACAACCACTGCCGAACGTGAA
ATTGTTCGTGATATCAAAGAAAAATTGTGCTATGTTGCACTTGACTTTGAACAAGAAATG
GCAACAGCTGCTTCATCAAGCTCATTGGAGAAATCATATGAATTGCCTGATGGACAAGTC
ATCACAATCGGAAATGAACGATTCCGTTGTCCAGAAGCATTGTTCCAGCCATCATTCTTG
GGTATGGAAGCATGTGGTATTCACGAGACAACATACAATTCAATCATGAAGTGTGACGTT
GATATCCGTAAAGACTTGTATGCCAACACAGTCTTGTCAGGTGGCACAACAATGTACCCA
GGTATCGCTGATCGTATGCAAAAGGAAATTACAGCATTAGCTCCATCAACAATGAAGATC
AAAATTATTGCACCACCAGAACGTAAATACTCAGTCTGGATCGGAGGTTCAATTTTGGCA
TCGCTCTCAACCTTCCAACAAATGTGGATCAGCAAACAAGAATATGATGAATCAGGCCCA
TCAATTGTCCACAGAAAATGCTTCTAAATTAATTATAATTGTAATCAATTACCACCTTTA
AGTCGTCGACATCAAGATCTTCAACCACAGAAACTCAAAAGACAATTGCATTTTTCACAG
TTGAAATTCCATTCATTACATTCCACCACTTACAACATCAACTTTAAGAAAACATGTATT
GTCAAAAATATTTTTTGCTCTTTTCTTTTCTATTATGAAAACAACATTTAAATTTAATTT
AATTATTATATTACACTACTTTCTCAAAGATCATGAATTTATCACTCAAAAAAAAAAAAT
GTGCAGAAAATGAATAAAAAGAAAAAGCTTCAAATTTCAAATTCATATAAAATTTTTCTT
>g14309.t10 Gene=g14309 Length=376
MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD
LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS
YELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL
SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK
QEYDESGPSIVHRKCF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g14309.t10 | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 9 | 182 | 5.37165E-20 |
| 14 | g14309.t10 | Gene3D | G3DSA:3.30.420.40 | - | 9 | 372 | 1.6E-192 |
| 13 | g14309.t10 | Gene3D | G3DSA:3.30.420.40 | - | 139 | 339 | 1.6E-192 |
| 12 | g14309.t10 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 181 | 273 | 1.6E-192 |
| 2 | g14309.t10 | PANTHER | PTHR11937:SF162 | ACTIN, INDIRECT FLIGHT MUSCLE-LIKE PROTEIN | 1 | 375 | 1.5E-257 |
| 3 | g14309.t10 | PANTHER | PTHR11937 | ACTIN | 1 | 375 | 1.5E-257 |
| 6 | g14309.t10 | PRINTS | PR00190 | Actin signature | 27 | 36 | 4.7E-58 |
| 8 | g14309.t10 | PRINTS | PR00190 | Actin signature | 50 | 61 | 4.7E-58 |
| 9 | g14309.t10 | PRINTS | PR00190 | Actin signature | 62 | 84 | 4.7E-58 |
| 5 | g14309.t10 | PRINTS | PR00190 | Actin signature | 116 | 129 | 4.7E-58 |
| 4 | g14309.t10 | PRINTS | PR00190 | Actin signature | 141 | 160 | 4.7E-58 |
| 7 | g14309.t10 | PRINTS | PR00190 | Actin signature | 237 | 253 | 4.7E-58 |
| 1 | g14309.t10 | Pfam | PF00022 | Actin | 4 | 376 | 1.9E-150 |
| 18 | g14309.t10 | ProSitePatterns | PS00406 | Actins signature 1. | 54 | 64 | - |
| 17 | g14309.t10 | ProSitePatterns | PS01132 | Actins and actin-related proteins signature. | 105 | 117 | - |
| 16 | g14309.t10 | ProSitePatterns | PS00432 | Actins signature 2. | 357 | 365 | - |
| 19 | g14309.t10 | SMART | SM00268 | actin_3 | 6 | 376 | 7.2E-243 |
| 11 | g14309.t10 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 5 | 154 | 8.17E-67 |
| 10 | g14309.t10 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 148 | 376 | 2.16E-100 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05692 (actin beta/gamma 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
