General information for g14309.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin-5C.
Parent gene
- The parent gene g14309 is located on chr_1: 36552428..36555404 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14309 | g14309.t16 | isoform | g14309.t16 | 36551667 | 36554119 |
| chr_1 | g14309 | g14309.t16 | exon | g14309.t16.exon1 | 36551667 | 36552167 |
| chr_1 | g14309 | g14309.t16 | TTS | g14309.t16 | 36551672 | 36551672 |
| chr_1 | g14309 | g14309.t16 | cds | g14309.t16.CDS1 | 36552128 | 36552167 |
| chr_1 | g14309 | g14309.t16 | exon | g14309.t16.exon2 | 36552230 | 36553070 |
| chr_1 | g14309 | g14309.t16 | cds | g14309.t16.CDS2 | 36552230 | 36553062 |
| chr_1 | g14309 | g14309.t16 | exon | g14309.t16.exon3 | 36553948 | 36554119 |
| chr_1 | g14309 | g14309.t16 | TSS | g14309.t16 | 36554119 | 36554119 |
Sequences
>g14309.t16 Gene=g14309 Length=1514
ACTTTGAATTGAGTTGTTGAAGAGTTTAGACGTTTTCTGTGAACGGTCTTTTGAATCATT
TTTTCCAATAAAAAATTAATTAAATCAATAGTGCTGTGTTTTAAAATTGCCGTAAAAGCA
TTCTCAAATCACCAATACTTTCTTTATTGTGAAATTTAAGGACTAAAACAAGAAATCAAA
ATGTGTGACGAAGAAGTTGCTGCATTGGTCGTTGACAATGGATCAGGAATGTGCAAAGCC
GGTTTTGCTGGTGATGATGCACCACGTGCCGTTTTCCCATCAATTGTCGGTCGTCCACGT
CATCAAGGCGTTATGGTCGGTATGGGACAAAAGGACTCATATGTTGGTGATGAGGCTCAA
AGCAAAAGAGGTATTCTTACCTTGAAATATCCAATTGAACACGGTATTGTTACAAACTGG
GATGATATGGAAAAGATCTGGCATCATACTTTCTACAATGAACTCCGTGTTGCACCTGAA
GAACATCCAGTCTTGCTTACCGAAGCTCCATTAAATCCAAAAGCAAATCGTGAAAAGATG
ACACAAATTATGTTCGAGACATTCAACACACCAGCTATGTATGTTGCAATTCAAGCTGTC
CTCTCATTGTATGCCTCAGGTCGTACAACTGGTATTGTTTTGGATTCTGGTGATGGTGTT
TCACACACAGTTCCAATTTACGAAGGTTATGCTTTGCCACATGCTATCCTTCGTCTTGAT
TTGGCCGGTCGTGATTTGACAGATTATTTGATGAAAATCTTAACCGAACGTGGATACTCA
TTCACAACCACTGCCGAACGTGAAATTGTTCGTGATATCAAAGAAAAATTGTGCTATGTT
GCACTTGACTTTGAACAAGAAATGGCAACAGCTGCTTCATCAAGCTCATTGGAGAAATCA
TATGAATTGCCTGATGGACAAGTCATCACAATCGGAAATGAACGATTCCGTTGTCCAGAA
GCATTGTTCCAGCCATCATTCTTGGGTATGGAAGCATGTGGTATTCACGAGACTCTTGTC
AGGTGGCACAACAATGTACCCAGGTATCGCTGATCGTATGCAAAAGGAAATTACAGCATT
AGCTCCATCAACAATGAAGATCAAAATTATTGCACCACCAGAACGTAAATACTCAGTCTG
GATCGGAGGTTCAATTTTGGCATCGCTCTCAACCTTCCAACAAATGTGGATCAGCAAACA
AGAATATGATGAATCAGGCCCATCAATTGTCCACAGAAAATGCTTCTAAATTAATTATAA
TTGTAATCAATTACCACCTTTAAGTCGTCGACATCAAGATCTTCAACCACAGAAACTCAA
AAGACAATTGCATTTTTCACAGTTGAAATTCCATTCATTACATTCCACCACTTACAACAT
CAACTTTAAGAAAACATGTATTGTCAAAAATATTTTTTGCTCTTTTCTTTTCTATTATGA
AAACAACATTTAAATTTAATTTAATTATTATATTACACTACTTTCTCAAAGATCATGAAT
TTATCACTCAAAAA
>g14309.t16 Gene=g14309 Length=290
MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD
LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS
YELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETLVRWHNNVPRYR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g14309.t16 | CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 9 | 182 | 2.48738E-20 |
| 14 | g14309.t16 | Gene3D | G3DSA:3.30.420.40 | - | 9 | 138 | 6.0E-140 |
| 13 | g14309.t16 | Gene3D | G3DSA:3.30.420.40 | - | 139 | 281 | 6.0E-140 |
| 12 | g14309.t16 | Gene3D | G3DSA:3.90.640.10 | Actin; Chain A | 181 | 273 | 6.0E-140 |
| 2 | g14309.t16 | PANTHER | PTHR11937:SF162 | ACTIN, INDIRECT FLIGHT MUSCLE-LIKE PROTEIN | 1 | 279 | 1.7E-194 |
| 3 | g14309.t16 | PANTHER | PTHR11937 | ACTIN | 1 | 279 | 1.7E-194 |
| 6 | g14309.t16 | PRINTS | PR00190 | Actin signature | 27 | 36 | 1.3E-58 |
| 8 | g14309.t16 | PRINTS | PR00190 | Actin signature | 50 | 61 | 1.3E-58 |
| 9 | g14309.t16 | PRINTS | PR00190 | Actin signature | 62 | 84 | 1.3E-58 |
| 5 | g14309.t16 | PRINTS | PR00190 | Actin signature | 116 | 129 | 1.3E-58 |
| 4 | g14309.t16 | PRINTS | PR00190 | Actin signature | 141 | 160 | 1.3E-58 |
| 7 | g14309.t16 | PRINTS | PR00190 | Actin signature | 237 | 253 | 1.3E-58 |
| 1 | g14309.t16 | Pfam | PF00022 | Actin | 4 | 275 | 5.0E-101 |
| 17 | g14309.t16 | ProSitePatterns | PS00406 | Actins signature 1. | 54 | 64 | - |
| 16 | g14309.t16 | ProSitePatterns | PS01132 | Actins and actin-related proteins signature. | 105 | 117 | - |
| 18 | g14309.t16 | SMART | SM00268 | actin_3 | 6 | 290 | 2.4E-132 |
| 11 | g14309.t16 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 5 | 154 | 3.56E-67 |
| 10 | g14309.t16 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 148 | 286 | 2.7E-51 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
